UHGV-0062817

Genome information

Genome length 29,606 bps

CDS count 50

Completeness 76.63% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062817
vOTU ID	vOTU-034796
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71281
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.74
Jumbo phage	No

Genome content
Genome length	29,606 bps
GC content	41.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	95.24%
Average CDS length	568.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062817_1	PHROG	phrog_21765	NA	unknown function
UHGV-0062817_1	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0062817_1	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0062817_2	PHROG	phrog_13289	tail protein	tail
UHGV-0062817_2	UniRef90	UniRef90_A0A1Y4EZM1	Prophage_tail domain-containing protein	NA
UHGV-0062817_2	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0062817_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0062817_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0062817_2	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0062817_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0062817_3	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0062817_3	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0062817_3	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0062817_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0062817_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0062817_4	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0062817_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0062817_4	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0062817_4	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0062817_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0062817_4	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0062817_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0062817_4	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0062817_6	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0062817_6	Structural annotation	PF11836	NA	NA
UHGV-0062817_7	PHROG	phrog_88	major tail protein	tail
UHGV-0062817_7	UniRef90	UniRef90_A0A1Y4R540	S-l_SbsC_C domain-containing protein	NA
UHGV-0062817_7	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0062817_7	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0062817_7	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0062817_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062817_8	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0062817_8	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0062817_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062817_8	Structural annotation	TIGR01725	NA	NA
UHGV-0062817_9	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0062817_9	Structural annotation	PF05657	NA	NA
UHGV-0062817_10	PHROG	phrog_19734	NA	unknown function
UHGV-0062817_10	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0062817_10	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0062817_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0062817_11	PHROG	phrog_2550	NA	unknown function
UHGV-0062817_11	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0062817_11	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0062817_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0062817_12	eggNOG-mapper	476272.RUMHYD_02855	NA	NA
UHGV-0062817_12	Structural annotation	PF18207	NA	NA
UHGV-0062817_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0062817_13	UniRef90	UniRef90_A0A143XZI6	Phage capsid family protein	NA
UHGV-0062817_13	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0062817_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0062817_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0062817_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0062817_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062817_14	KOfam	K06904	NA	NA
UHGV-0062817_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0062817_14	UniRef90	UniRef90_A0A8G1TPN9	HK97 family phage prohead protease	NA
UHGV-0062817_14	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0062817_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0062817_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0062817_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0062817_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0062817_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0062817_15	UniRef90	UniRef90_A0A3D1FM97	Phage portal protein	NA
UHGV-0062817_15	eggNOG-mapper	1235798.C817_04583	Phage portal protein, HK97 family	NA
UHGV-0062817_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0062817_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0062817_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0062817_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0062817_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0062817_16	UniRef90	UniRef90_A0A3D1FL87	Terminase	NA
UHGV-0062817_16	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0062817_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0062817_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0062817_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0062817_16	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0062817_17	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0062817_17	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-0062817_17	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-0062817_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0062817_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0062817_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062817_19	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0062817_19	eggNOG-mapper	908340.HMPREF9406_2583	HNH nucleases	NA
UHGV-0062817_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0062817_19	Structural annotation	TIGR02646	NA	NA
UHGV-0062817_20	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0062817_20	UniRef90	UniRef90_C0CPP2	HicB-like domain-containing protein	NA
UHGV-0062817_20	eggNOG-mapper	476272.RUMHYD_02843	NA	NA
UHGV-0062817_20	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0062817_20	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0062817_20	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0062817_21	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0062817_21	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0062817_21	UniRef90	UniRef90_A0A1Q9J5T7	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0062817_21	eggNOG-mapper	476272.RUMHYD_02842	NA	NA
UHGV-0062817_21	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0062817_21	Structural annotation	PF07927	NA	NA
UHGV-0062817_22	PHROG	phrog_11237	NA	unknown function
UHGV-0062817_22	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0062817_23	PHROG	phrog_19011	NA	unknown function
UHGV-0062817_24	eggNOG-mapper	1235792.C808_03073	NA	NA
UHGV-0062817_25	eggNOG-mapper	476272.RUMHYD_01746	NA	NA
UHGV-0062817_27	Structural annotation	PF13211	NA	NA
UHGV-0062817_29	PHROG	phrog_15198	NA	unknown function
UHGV-0062817_29	UniRef90	UniRef90_A0A7C6JVC0	NA	NA
UHGV-0062817_29	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0062817_30	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0062817_30	UniRef90	UniRef90_UPI001898D077	radical SAM protein	NA
UHGV-0062817_30	eggNOG-mapper	478749.BRYFOR_07592	NA	NA
UHGV-0062817_30	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0062817_30	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0062817_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0062817_31	UniRef90	UniRef90_A0A4R2KAL0	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0062817_31	Structural annotation	PF12643, NF002747, COG0140	NA	NA
UHGV-0062817_32	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0062817_32	Structural annotation	PF17399	NA	NA
UHGV-0062817_34	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0062817_34	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0062817_34	UniRef90	UniRef90_A0A173R9X5	Replicative DNA helicase	NA
UHGV-0062817_34	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0062817_34	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0062817_34	Pfam	PF06745	KaiC	ATPase
UHGV-0062817_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0062817_34	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0062817_35	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0062817_35	UniRef90	UniRef90_A0A1I4EWY4	DnaD and phage-associated domain-containing protein	NA
UHGV-0062817_35	eggNOG-mapper	476272.RUMHYD_02833	Transcriptional regulator	NA
UHGV-0062817_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062817_36	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0062817_36	UniRef90	UniRef90_A0A173R9N6	ERCC4 domain-containing protein	NA
UHGV-0062817_36	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0062817_36	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0062817_36	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0062817_37	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0062817_37	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0062817_38	PHROG	phrog_18107	NA	unknown function
UHGV-0062817_38	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0062817_38	Structural annotation	PF05037	NA	NA
UHGV-0062817_39	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062817_39	UniRef90	UniRef90_A0A173R9Q6	AAA domain-containing protein	NA
UHGV-0062817_39	eggNOG-mapper	476272.RUMHYD_03897	AAA domain	NA
UHGV-0062817_39	Pfam	PF13479	AAA domain	AAA_24
UHGV-0062817_39	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0062817_44	UniRef90	UniRef90_C0CPM9	HTH_17 domain-containing protein	NA
UHGV-0062817_44	eggNOG-mapper	476272.RUMHYD_02830	Helix-turn-helix domain	NA
UHGV-0062817_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0062817_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0062817_44	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0062817_45	PHROG	phrog_34107	NA	unknown function
UHGV-0062817_45	eggNOG-mapper	476272.RUMHYD_02829	NA	NA
UHGV-0062817_47	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0062817_47	UniRef90	UniRef90_R5BWZ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0062817_47	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-0062817_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0062817_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062817_48	UniRef90	UniRef90_R5BTC8	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0062817_48	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062817_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062817_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062817_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0062817_49	PHROG	phrog_87	metallo-protease	other
UHGV-0062817_49	UniRef90	UniRef90_R5C1M2	Peptidase_M78 domain-containing protein	NA
UHGV-0062817_49	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0062817_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0062817_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0062817_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0062817_50	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0062817_50	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062817_50	UniRef90	UniRef90_UPI001958FD57	type I restriction endonuclease	NA
UHGV-0062817_50	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0062817_50	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0062817_50	COG	COG4748	NA	NA