UHGV-0062963

Genome information

Genome length 51,375 bps

CDS count 78

Completeness 85.44% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062963
vOTU ID	vOTU-021132
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_70560
BioSample	SAMEA2338816
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.36
Jumbo phage	No

Genome content
Genome length	51,375 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	90.36%
Average CDS length	598.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062963_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0062963_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0062963_1	UniRef90	UniRef90_UPI00156E1587	recombinase family protein	NA
UHGV-0062963_1	eggNOG-mapper	645991.Sgly_0308	Resolvase, N terminal domain	NA
UHGV-0062963_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0062963_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0062963_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0062963_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0062963_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0062963_2	UniRef90	UniRef90_UPI000CF90DE2	NA	NA
UHGV-0062963_2	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0062963_2	Pfam	PF16729	NA	DUF5067
UHGV-0062963_2	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0062963_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062963_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0062963_3	UniRef90	UniRef90_A0A3E2WBI2	LexA family transcriptional regulator	NA
UHGV-0062963_3	eggNOG-mapper	1232453.BAIF02000027_gene4195	Peptidase S24-like	NA
UHGV-0062963_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062963_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0062963_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0062963_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0062963_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0062963_5	Structural annotation	TIGR03745	NA	NA
UHGV-0062963_14	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0062963_14	PHROG	phrog_24603	NA	unknown function
UHGV-0062963_14	UniRef90	UniRef90_F7KUX5	Spo0A_C domain-containing protein	NA
UHGV-0062963_14	eggNOG-mapper	411470.RUMGNA_01611	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0062963_14	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0062963_14	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0062963_14	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0062963_15	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0062963_15	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062963_15	UniRef90	UniRef90_UPI0015701E99	NA	NA
UHGV-0062963_15	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0062963_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-0062963_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0062963_15	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0062963_16	PHROG	phrog_4400	NA	unknown function
UHGV-0062963_16	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0062963_16	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0062963_16	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0062963_17	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0062963_18	PHROG	phrog_9958	NA	unknown function
UHGV-0062963_18	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0062963_18	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0062963_18	Structural annotation	PF19789	NA	NA
UHGV-0062963_19	PHROG	phrog_9958	NA	unknown function
UHGV-0062963_19	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0062963_19	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0062963_19	Pfam	PF19789	NA	DUF6273
UHGV-0062963_19	Structural annotation	PF19789	NA	NA
UHGV-0062963_20	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0062963_20	UniRef90	UniRef90_A0A4Q5C8K1	Four helix bundle protein	NA
UHGV-0062963_20	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0062963_20	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0062963_20	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0062963_21	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0062963_21	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0062963_21	UniRef90	UniRef90_F7JKD0	Reverse transcriptase domain-containing protein	NA
UHGV-0062963_21	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0062963_21	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0062963_21	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0062963_21	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0062963_21	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0062963_22	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062963_22	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0062963_22	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0062963_22	Pfam	PF03837	RecT family	RecT
UHGV-0062963_22	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0062963_23	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0062963_23	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0062963_23	UniRef90	UniRef90_R9KKY4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062963_23	eggNOG-mapper	397290.C810_01455	sigma factor activity	NA
UHGV-0062963_23	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0062963_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0062963_23	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062963_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0062963_23	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0062963_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0062963_24	UniRef90	UniRef90_UPI00156E9C85	MBL fold metallo-hydrolase	NA
UHGV-0062963_24	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0062963_24	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0062963_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0062963_24	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0062963_26	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0062963_26	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0062963_27	PHROG	phrog_1029	NA	unknown function
UHGV-0062963_27	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0062963_27	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0062963_27	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0062963_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0062963_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062963_28	UniRef90	UniRef90_UPI00156F5489	single-stranded DNA-binding protein	NA
UHGV-0062963_28	eggNOG-mapper	553973.CLOHYLEM_07405	Single-stranded DNA-binding protein	NA
UHGV-0062963_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0062963_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0062963_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0062963_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0062963_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0062963_29	eggNOG-mapper	1298920.KI911353_gene2716	NA	NA
UHGV-0062963_29	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0062963_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0062963_30	UniRef90	UniRef90_A0A174JIY0	ERCC4 domain-containing protein	NA
UHGV-0062963_30	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0062963_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0062963_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0062963_31	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0062963_31	UniRef90	UniRef90_UPI00156F03BA	NA	NA
UHGV-0062963_31	eggNOG-mapper	1256908.HMPREF0373_00661	NA	NA
UHGV-0062963_31	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0062963_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062963_32	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0062963_32	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0062963_32	UniRef90	UniRef90_UPI00156FDC50	AAA family ATPase	NA
UHGV-0062963_32	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0062963_32	Pfam	PF13481	AAA domain	AAA_25
UHGV-0062963_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0062963_32	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0062963_37	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0062963_37	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0062963_37	UniRef90	UniRef90_A0A7U9NKS8	DNA adenine methylase	NA
UHGV-0062963_37	eggNOG-mapper	610130.Closa_0735	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0062963_37	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0062963_37	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0062963_37	COG	COG0338	DNA-adenine methylase	NA
UHGV-0062963_37	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0062963_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0062963_41	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0062963_41	UniRef90	UniRef90_UPI000B87723F	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0062963_41	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0062963_41	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0062963_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0062963_41	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0062963_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062963_41	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0062963_42	PHROG	phrog_38560	NA	unknown function
UHGV-0062963_42	eggNOG-mapper	610130.Closa_0723	NA	NA
UHGV-0062963_43	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0062963_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0062963_43	UniRef90	UniRef90_UPI00156ED15A	tyrosine-type recombinase/integrase	NA
UHGV-0062963_43	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0062963_43	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0062963_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062963_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0062963_43	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0062963_46	Structural annotation	PF04347	NA	NA
UHGV-0062963_47	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0062963_47	UniRef90	UniRef90_A0A8G1TME9	XRE family transcriptional regulator	NA
UHGV-0062963_47	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0062963_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0062963_47	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0062963_49	PHROG	phrog_31631	NA	unknown function
UHGV-0062963_50	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0062963_54	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0062963_55	Structural annotation	PF16467	NA	NA
UHGV-0062963_56	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0062963_56	UniRef90	UniRef90_A0A415D4U9	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0062963_56	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0062963_56	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0062963_56	COG	COG5410	NA	NA
UHGV-0062963_56	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0062963_57	PHROG	phrog_7024	NA	unknown function
UHGV-0062963_57	eggNOG-mapper	663278.Ethha_1824	NA	NA
UHGV-0062963_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0062963_58	UniRef90	UniRef90_A0A412MDT8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062963_58	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0062963_58	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0062963_58	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0062963_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0062963_59	UniRef90	UniRef90_UPI000CDAA57E	phage portal protein	NA
UHGV-0062963_59	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0062963_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0062963_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0062963_60	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0062963_60	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0062963_61	PHROG	phrog_909	major head protein	head and packaging
UHGV-0062963_61	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0062963_62	PHROG	phrog_29	major head protein	head and packaging
UHGV-0062963_62	UniRef90	UniRef90_A0A3E2WEV2	S-l_SbsC_C domain-containing protein	NA
UHGV-0062963_62	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0062963_62	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0062963_62	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0062963_62	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0062963_63	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0062963_64	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0062963_64	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0062963_66	PHROG	phrog_1233	NA	unknown function
UHGV-0062963_66	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0062963_66	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0062963_67	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-0062963_67	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0062963_67	AcrCatalog	cluster_24841	NA	NA
UHGV-0062963_68	PHROG	phrog_11520	NA	unknown function
UHGV-0062963_68	eggNOG-mapper	1209989.TepiRe1_1148	NA	NA
UHGV-0062963_68	Structural annotation	PF14337	NA	NA
UHGV-0062963_69	Structural annotation	PF05657	NA	NA
UHGV-0062963_70	PHROG	phrog_158	major tail protein	tail
UHGV-0062963_70	UniRef90	UniRef90_UPI00156EB292	phage tail protein	NA
UHGV-0062963_70	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0062963_70	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0062963_70	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0062963_71	PHROG	phrog_36112	NA	unknown function
UHGV-0062963_71	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0062963_71	Structural annotation	PF16478	NA	NA
UHGV-0062963_73	PHROG	phrog_2546	NA	unknown function
UHGV-0062963_73	UniRef90	UniRef90_UPI00156DADFD	zinc ribbon domain-containing protein	NA
UHGV-0062963_73	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0062963_73	COG	COG4640	NA	NA
UHGV-0062963_74	PHROG	phrog_28918	NA	unknown function
UHGV-0062963_74	UniRef90	UniRef90_UPI00156F888B	transglycosylase SLT domain-containing protein	NA
UHGV-0062963_74	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-0062963_74	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0062963_74	COG	COG3953	SLT domain protein	NA
UHGV-0062963_75	PHROG	phrog_1194	NA	unknown function
UHGV-0062963_75	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0062963_75	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0062963_76	PHROG	phrog_13879	NA	unknown function
UHGV-0062963_76	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0062963_76	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0062963_77	PHROG	phrog_18725	NA	unknown function
UHGV-0062963_77	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0062963_78	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA