UHGV-0062990

Genome information

Genome length 39,612 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062990
vOTU ID	vOTU-004278
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_91653
BioSample	SAMEA2467037
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.98
Jumbo phage	No

Genome content
Genome length	39,612 bps
GC content	42.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.21%
Average CDS length	579.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062990_1	PHROG	phrog_20532	NA	unknown function
UHGV-0062990_1	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0062990_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0062990_2	PHROG	phrog_7566	NA	unknown function
UHGV-0062990_2	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0062990_2	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0062990_3	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0062990_3	UniRef90	UniRef90_UPI001ADD7D79	NA	NA
UHGV-0062990_3	eggNOG-mapper	342113.DM82_1124	NA	NA
UHGV-0062990_3	Pfam	PF06356	NA	DUF1064
UHGV-0062990_3	Structural annotation	PF06356	NA	NA
UHGV-0062990_5	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0062990_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0062990_5	UniRef90	UniRef90_A0A143XML8	Tyrosine recombinase XerD	NA
UHGV-0062990_5	eggNOG-mapper	1121098.HMPREF1534_00499	Belongs to the 'phage' integrase family	NA
UHGV-0062990_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062990_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062990_5	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0062990_8	PHROG	phrog_1455	NA	unknown function
UHGV-0062990_8	eggNOG-mapper	1280692.AUJL01000009_gene2996	NA	NA
UHGV-0062990_8	Pfam	PF21793	NA	DUF6877
UHGV-0062990_8	Structural annotation	PF21793	NA	NA
UHGV-0062990_9	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0062990_9	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0062990_9	UniRef90	UniRef90_A0A415L497	N-6 DNA methylase	NA
UHGV-0062990_9	eggNOG-mapper	1095750.HMPREF9970_0171	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0062990_9	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0062990_9	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0062990_9	Structural annotation	PF02475, MF_02217, NF000058, COG2263	NA	NA
UHGV-0062990_10	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0062990_10	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0062990_10	UniRef90	UniRef90_A0A415MT84	N6_Mtase domain-containing protein	NA
UHGV-0062990_10	eggNOG-mapper	1095750.HMPREF9970_0172	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0062990_10	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0062990_10	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0062990_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0062990_10	Structural annotation	PF02384, TIGR00497, COG0286	NA	NA
UHGV-0062990_11	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0062990_11	eggNOG-mapper	445972.ANACOL_01835	NA	NA
UHGV-0062990_11	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0062990_11	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0062990_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0062990_12	UniRef90	UniRef90_A0A285PT83	Homeobox domain-like	NA
UHGV-0062990_12	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0062990_12	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0062990_12	Structural annotation	PF07141	NA	NA
UHGV-0062990_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062990_13	PHROG	phrog_10250	NA	unknown function
UHGV-0062990_13	UniRef90	UniRef90_A0A285PT65	Phage_term_2: phage terminase, large subunit, PBSX family	NA
UHGV-0062990_13	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0062990_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0062990_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062990_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062990_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062990_13	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0062990_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0062990_14	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0062990_14	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0062990_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0062990_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0062990_15	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0062990_15	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0062990_15	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0062990_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0062990_15	COG	COG2369	NA	NA
UHGV-0062990_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0062990_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062990_16	UniRef90	UniRef90_A0A285PXV7	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062990_16	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062990_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0062990_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062990_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0062990_17	eggNOG-mapper	411469.EUBHAL_00974	CHAP domain	NA
UHGV-0062990_17	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0062990_17	Structural annotation	PF05382	NA	NA
UHGV-0062990_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0062990_18	PHROG	phrog_291	endolysin	lysis
UHGV-0062990_18	UniRef90	UniRef90_A0A285PUE0	Lysozyme	NA
UHGV-0062990_18	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0062990_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0062990_18	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0062990_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0062990_18	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0062990_19	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0062990_19	Structural annotation	PF06810	NA	NA
UHGV-0062990_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0062990_20	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0062990_20	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0062990_20	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0062990_21	PHROG	phrog_1236	head protein	head and packaging
UHGV-0062990_22	PHROG	phrog_17977	NA	unknown function
UHGV-0062990_22	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0062990_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0062990_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0062990_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0062990_23	Structural annotation	PF11367	NA	NA
UHGV-0062990_24	PHROG	phrog_885	major tail protein	tail
UHGV-0062990_24	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0062990_24	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0062990_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0062990_25	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0062990_27	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0062990_27	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-0062990_27	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0062990_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0062990_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0062990_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0062990_27	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0062990_28	UniRef90	UniRef90_A0A285PT43	Fibronectin type III	NA
UHGV-0062990_28	eggNOG-mapper	1410624.JNKK01000017_gene1986	Fibronectin type 3 domain	NA
UHGV-0062990_28	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0062990_28	Structural annotation	PF02010, PF06995, PF16794, PF16303, PF19271, MF_04116, NF010681, TIGR02126, COG3499, COG3401	NA	NA
UHGV-0062990_29	PHROG	phrog_1887	tail protein	tail
UHGV-0062990_29	UniRef90	UniRef90_UPI001C38532D	phage tail protein	NA
UHGV-0062990_29	eggNOG-mapper	1392487.JIAD01000001_gene511	NA	NA
UHGV-0062990_29	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0062990_30	eggNOG-mapper	1042156.CXIVA_07180	NA	NA
UHGV-0062990_30	Structural annotation	PF01176, MF_00085, NF003076, COG0231	NA	NA
UHGV-0062990_33	eggNOG-mapper	1349822.NSB1T_02965	NA	NA
UHGV-0062990_34	PHROG	phrog_2310	NA	unknown function
UHGV-0062990_35	PHROG	phrog_199	holin	lysis
UHGV-0062990_35	UniRef90	UniRef90_A0A285PUE3	Bacteriophage holin family	NA
UHGV-0062990_35	eggNOG-mapper	394503.Ccel_2943	toxin secretion phage lysis holin	NA
UHGV-0062990_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0062990_35	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0062990_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0062990_36	UniRef90	UniRef90_A0A285PXT6	Winged helix-turn-helix DNA-binding domain	NA
UHGV-0062990_37	PHROG	phrog_3754	NA	unknown function
UHGV-0062990_37	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0062990_38	PHROG	phrog_21718	NA	unknown function
UHGV-0062990_38	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0062990_38	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0062990_39	PHROG	phrog_16490	NA	unknown function
UHGV-0062990_39	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0062990_40	PHROG	phrog_20016	NA	unknown function
UHGV-0062990_40	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0062990_40	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0062990_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0062990_41	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0062990_41	Structural annotation	PF12510	NA	NA
UHGV-0062990_42	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0062990_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0062990_43	PHROG	phrog_95	integrase	integration and excision
UHGV-0062990_43	UniRef90	UniRef90_A0A285PUJ0	Resolvase, N terminal domain	NA
UHGV-0062990_43	eggNOG-mapper	1235792.C808_00048	Resolvase, N terminal domain	NA
UHGV-0062990_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0062990_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0062990_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0062990_43	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0062990_44	eggNOG-mapper	1235798.C817_04601	NA	NA
UHGV-0062990_44	Structural annotation	TIGR03826	NA	NA
UHGV-0062990_46	AcrCatalog	cluster_32378	NA	NA
UHGV-0062990_47	UniRef90	UniRef90_A0A285PUG9	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0062990_47	eggNOG-mapper	1235790.C805_02349	Transcriptional regulator	NA
UHGV-0062990_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0062990_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0062990_47	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0062990_48	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0062990_49	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0062990_50	PHROG	phrog_806	NA	unknown function
UHGV-0062990_50	UniRef90	UniRef90_A0A285PTA3	NA	NA
UHGV-0062990_50	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0062990_50	Pfam	PF11611	NA	DUF4352
UHGV-0062990_50	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0062990_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0062990_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062990_52	UniRef90	UniRef90_UPI001ADDE640	helix-turn-helix domain-containing protein	NA
UHGV-0062990_52	eggNOG-mapper	332101.JIBU02000023_gene4733	Helix-turn-helix domain protein	NA
UHGV-0062990_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062990_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062990_52	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0062990_53	UniRef90	UniRef90_R5GPD4	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0062990_53	eggNOG-mapper	910314.HMPREF9220_0645	NA	NA
UHGV-0062990_53	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0062990_54	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0062990_54	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0062990_54	UniRef90	UniRef90_UPI001ADD788B	phage antirepressor KilAC domain-containing protein	NA
UHGV-0062990_54	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0062990_54	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0062990_54	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0062990_54	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0062990_54	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0062990_57	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0062990_57	UniRef90	UniRef90_UPI0011C364A6	helix-turn-helix domain-containing protein	NA
UHGV-0062990_57	eggNOG-mapper	994573.T472_0204055	NA	NA
UHGV-0062990_57	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062990_57	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0062990_58	PHROG	phrog_9804	NA	unknown function
UHGV-0062990_58	UniRef90	UniRef90_A0A285PUF9	Loader and inhibitor of phage G40P	NA
UHGV-0062990_58	eggNOG-mapper	1291050.JAGE01000002_gene3261	Loader and inhibitor of phage G40P	NA
UHGV-0062990_58	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0062990_58	Structural annotation	PF11417	NA	NA
UHGV-0062990_61	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0062990_61	UniRef90	UniRef90_A0A285PT93	Siphovirus Gp157	NA
UHGV-0062990_61	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0062990_61	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0062990_61	Structural annotation	PF05565	NA	NA
UHGV-0062990_62	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062990_62	UniRef90	UniRef90_UPI001ADDDE31	ERF family protein	NA
UHGV-0062990_62	eggNOG-mapper	1118057.CAGX01000020_gene1653	ERF superfamily	NA
UHGV-0062990_62	Pfam	PF04404	ERF superfamily	ERF
UHGV-0062990_62	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0062990_63	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0062990_63	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0062990_63	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0062990_63	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0062990_64	PHROG	phrog_5070	NA	unknown function
UHGV-0062990_64	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0062990_64	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0062990_64	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA