UHGV-0063139

Genome information

Genome length 38,145 bps

CDS count 67

Completeness 99.18% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063139
vOTU ID	vOTU-061459
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_82324
BioSample	SAMEA2338677
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.74
Jumbo phage	No

Genome content
Genome length	38,145 bps
GC content	27.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.91%
Average CDS length	508.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063139_4	PHROG	phrog_2329	NA	unknown function
UHGV-0063139_4	UniRef90	UniRef90_A0A8I1VFN4	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0063139_5	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063139_5	UniRef90	UniRef90_UPI001C1135AD	HNH endonuclease	NA
UHGV-0063139_5	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0063139_5	Structural annotation	PF00847	NA	NA
UHGV-0063139_6	PHROG	phrog_18955	NA	unknown function
UHGV-0063139_6	UniRef90	UniRef90_R7FGU9	Peptidoglycan-binding domain 1 protein	NA
UHGV-0063139_6	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-0063139_6	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0063139_6	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0063139_6	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0063139_6	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-0063139_8	Structural annotation	TIGR03711	NA	NA
UHGV-0063139_9	PHROG	phrog_24267	NA	unknown function
UHGV-0063139_9	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0063139_9	eggNOG-mapper	1403946.Q615_SPAC00113G0087	NA	NA
UHGV-0063139_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0063139_9	Structural annotation	COG4675	NA	NA
UHGV-0063139_10	PHROG	phrog_5555	tail protein	tail
UHGV-0063139_10	UniRef90	UniRef90_R6HDY9	Staphylococcus haemolyticus JCSC1435 DNA complete genome	NA
UHGV-0063139_10	eggNOG-mapper	562743.JH976440_gene347	Phage minor structural protein	NA
UHGV-0063139_10	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0063139_10	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0063139_11	UniRef90	UniRef90_A0A7V8A6H9	PblB	NA
UHGV-0063139_11	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0063139_11	Structural annotation	PF16466, TIGR03361, COG3500	NA	NA
UHGV-0063139_12	PHROG	phrog_1194	NA	unknown function
UHGV-0063139_12	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0063139_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0063139_13	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-0063139_13	COG	COG1511	NA	NA
UHGV-0063139_13	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0063139_14	PHROG	phrog_706	NA	unknown function
UHGV-0063139_14	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0063139_14	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0063139_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0063139_14	Structural annotation	PF06854	NA	NA
UHGV-0063139_16	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0063139_16	UniRef90	UniRef90_A0A415L489	NA	NA
UHGV-0063139_16	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-0063139_16	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0063139_16	Pfam	PF12978	NA	DUF3862
UHGV-0063139_16	Structural annotation	PF12978, PF10571, MF_00925, NF008423, COG2913	NA	NA
UHGV-0063139_17	PHROG	phrog_3099	NA	unknown function
UHGV-0063139_17	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0063139_17	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0063139_18	PHROG	phrog_3266	tail completion	connector
UHGV-0063139_18	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-0063139_18	eggNOG-mapper	883114.HMPREF9709_01189	NA	NA
UHGV-0063139_18	Structural annotation	PF12691	NA	NA
UHGV-0063139_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0063139_19	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-0063139_19	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-0063139_19	Structural annotation	PF11114	NA	NA
UHGV-0063139_20	PHROG	phrog_3366	NA	unknown function
UHGV-0063139_20	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0063139_20	Pfam	PF20536	NA	DUF6751
UHGV-0063139_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0063139_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0063139_21	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0063139_22	PHROG	phrog_544	major head protein	head and packaging
UHGV-0063139_22	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0063139_22	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0063139_22	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0063139_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0063139_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0063139_23	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0063139_23	eggNOG-mapper	608534.GCWU000341_02294	Phage minor structural protein GP20	NA
UHGV-0063139_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0063139_23	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0063139_24	Structural annotation	PF09871, TIGR00739, COG1862	NA	NA
UHGV-0063139_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0063139_26	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-0063139_26	eggNOG-mapper	1395513.P343_12675	Phage minor capsid protein 2	NA
UHGV-0063139_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0063139_26	COG	COG2369	NA	NA
UHGV-0063139_26	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0063139_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0063139_27	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0063139_27	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0063139_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0063139_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0063139_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0063139_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0063139_28	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0063139_28	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0063139_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0063139_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0063139_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0063139_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0063139_31	PHROG	phrog_1233	NA	unknown function
UHGV-0063139_31	Structural annotation	PF13058	NA	NA
UHGV-0063139_36	PHROG	phrog_1048	NA	unknown function
UHGV-0063139_36	UniRef90	UniRef90_UPI001D02F1DD	NA	NA
UHGV-0063139_36	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0063139_36	Pfam	PF11195	NA	DUF2829
UHGV-0063139_36	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0063139_36	Structural annotation	PF11195	NA	NA
UHGV-0063139_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0063139_37	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0063139_37	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0063139_42	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0063139_42	UniRef90	UniRef90_A0A7Z0EIA5	Rhodanese-related sulfurtransferase	NA
UHGV-0063139_42	eggNOG-mapper	33898.JRHJ01000076_gene397	NA	NA
UHGV-0063139_42	Structural annotation	TIGR01689	NA	NA
UHGV-0063139_50	PHROG	phrog_98	NA	unknown function
UHGV-0063139_50	UniRef90	UniRef90_A0A1Q6LH52	YopX domain-containing protein	NA
UHGV-0063139_50	eggNOG-mapper	1235800.C819_02639	YopX protein	NA
UHGV-0063139_50	Pfam	PF09643	YopX protein	YopX
UHGV-0063139_50	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0063139_50	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0063139_51	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0063139_51	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0063139_51	UniRef90	UniRef90_A0A7X2N4X4	DNA methyltransferase	NA
UHGV-0063139_51	eggNOG-mapper	1235802.C823_05480	MT-A70	NA
UHGV-0063139_51	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0063139_51	Pfam	PF05063	MT-A70	MT-A70
UHGV-0063139_51	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0063139_51	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0063139_53	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0063139_53	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0063139_53	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0063139_53	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0063139_55	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-0063139_57	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0063139_59	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0063139_59	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0063139_60	PHROG	phrog_11717	NA	unknown function
UHGV-0063139_60	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0063139_60	Structural annotation	PF06420, COG5055	NA	NA
UHGV-0063139_65	UniRef90	UniRef90_A0A1Q6M1W5	HTH cro/C1-type domain-containing protein	NA
UHGV-0063139_65	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0063139_65	Pfam	PF05339	NA	DUF739
UHGV-0063139_65	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0063139_66	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0063139_66	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0063139_66	UniRef90	UniRef90_R7FH14	LexA repressor family protein	NA
UHGV-0063139_66	eggNOG-mapper	742743.HMPREF9453_00588	Peptidase S24-like	NA
UHGV-0063139_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063139_66	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0063139_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0063139_66	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0063139_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0063139_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0063139_67	UniRef90	UniRef90_R7FHL4	Phage site-specific recombinase	NA
UHGV-0063139_67	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-0063139_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0063139_67	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0063139_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0063139_67	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA