UHGV-0063156

Genome information

Genome length 35,580 bps

CDS count 45

Completeness 76.47% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063156
vOTU ID	vOTU-040698
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_73382
BioSample	SAMEA2338651
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.81
Jumbo phage	No

Genome content
Genome length	35,580 bps
GC content	60.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.31%
Average CDS length	725.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063156_1	PHROG	phrog_11138	NA	unknown function
UHGV-0063156_1	UniRef90	UniRef90_UPI000C06CE3E	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0063156_1	eggNOG-mapper	397287.C807_03999	Sigma-70, region 4	NA
UHGV-0063156_1	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0063156_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0063156_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0063156_1	Structural annotation	PF08281, MF_00245, NF009186, COG1595	NA	NA
UHGV-0063156_2	PHROG	phrog_7234	NA	unknown function
UHGV-0063156_2	eggNOG-mapper	1235800.C819_01436	NA	NA
UHGV-0063156_3	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0063156_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0063156_3	UniRef90	UniRef90_UPI001D068D73	DEAD/DEAH box helicase	NA
UHGV-0063156_3	eggNOG-mapper	1121428.DESHY_10039___1	DNA RNA helicase, superfamily II, SNF2 family	NA
UHGV-0063156_3	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0063156_3	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0063156_3	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0063156_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0063156_3	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0063156_4	eggNOG-mapper	887929.HMP0721_2442	NA	NA
UHGV-0063156_5	PHROG	phrog_2378	NA	unknown function
UHGV-0063156_5	UniRef90	UniRef90_A0A0E4GE38	STAT transcription factor, coiled coil	NA
UHGV-0063156_5	eggNOG-mapper	1121428.DESHY_10040___1	NA	NA
UHGV-0063156_6	PHROG	phrog_23155	NA	unknown function
UHGV-0063156_6	eggNOG-mapper	203119.Cthe_1651	NA	NA
UHGV-0063156_6	Structural annotation	PF18897	NA	NA
UHGV-0063156_7	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0063156_7	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0063156_7	UniRef90	UniRef90_UPI0015B599F9	bifunctional 3'-5' exonuclease/DNA polymerase	NA
UHGV-0063156_7	eggNOG-mapper	498761.HM1_2898	DNA polymerase	NA
UHGV-0063156_7	PADLOC	drt-cluster58	DRT	DRT
UHGV-0063156_7	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0063156_7	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0063156_7	NCBIFam	NF011541.0	bifunctional 3'-5' exonuclease/DNA polymerase	NA
UHGV-0063156_7	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0063156_7	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0063156_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0063156_8	UniRef90	UniRef90_A0A7X7FI60	NA	NA
UHGV-0063156_8	eggNOG-mapper	1235802.C823_05298	NA	NA
UHGV-0063156_8	Pfam	PF14359	NA	DUF4406
UHGV-0063156_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0063156_9	eggNOG-mapper	1458462.JNLK01000001_gene1569	NA	NA
UHGV-0063156_10	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0063156_10	UniRef90	UniRef90_G8LZB6	Bifunctional DNA primase/polymerase famiily protein	NA
UHGV-0063156_10	eggNOG-mapper	720554.Clocl_3607	DNA primase activity	NA
UHGV-0063156_10	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0063156_10	Structural annotation	PF06048, PF09250, MF_00016, NF040949, COG4983, COG5519	NA	NA
UHGV-0063156_11	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063156_11	UniRef90	UniRef90_UPI000590CF27	VRR-NUC domain-containing protein	NA
UHGV-0063156_11	eggNOG-mapper	498761.HM1_2894	VRR_NUC	NA
UHGV-0063156_11	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0063156_11	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0063156_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0063156_12	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-0063156_12	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0063156_12	Pfam	PF07374	NA	DUF1492
UHGV-0063156_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0063156_12	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0063156_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0063156_14	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063156_14	UniRef90	UniRef90_A0A853JIL9	HNH endonuclease	NA
UHGV-0063156_14	eggNOG-mapper	591001.Acfer_1082	HNH endonuclease domain protein	NA
UHGV-0063156_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0063156_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0063156_14	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0063156_15	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0063156_15	UniRef90	UniRef90_A0A1V5NK88	Phage terminase, small subunit	NA
UHGV-0063156_15	eggNOG-mapper	1121428.DESHY_10053___1	NA	NA
UHGV-0063156_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0063156_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0063156_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0063156_16	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0063156_16	UniRef90	UniRef90_G5FA33	ParB domain-containing protein	NA
UHGV-0063156_16	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0063156_16	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0063156_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0063156_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0063156_16	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0063156_17	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0063156_17	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0063156_17	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0063156_17	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0063156_17	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0063156_18	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0063156_18	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0063156_18	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0063156_18	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0063156_18	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0063156_19	UniRef90	UniRef90_UPI00041DBF60	Arc family DNA-binding protein	NA
UHGV-0063156_19	eggNOG-mapper	537013.CLOSTMETH_03458	NA	NA
UHGV-0063156_20	PHROG	phrog_289	GTP-binding domain	other
UHGV-0063156_20	UniRef90	UniRef90_UPI0014132873	SLOG family protein	NA
UHGV-0063156_20	eggNOG-mapper	877414.ATWA01000045_gene1862	DNA mediated transformation	NA
UHGV-0063156_20	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0063156_20	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0063156_20	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-0063156_21	KOfam	K24451	zim; modification methylase	NA
UHGV-0063156_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0063156_21	UniRef90	UniRef90_A0A0E4GC92	Methyltransferase	NA
UHGV-0063156_21	eggNOG-mapper	1121428.DESHY_10055___1	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0063156_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0063156_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0063156_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0063156_21	COG	COG0863	DNA modification methylase	NA
UHGV-0063156_21	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0063156_23	eggNOG-mapper	742733.HMPREF9469_00910	NA	NA
UHGV-0063156_24	eggNOG-mapper	498761.HM1_0045	NA	NA
UHGV-0063156_26	PHROG	phrog_3782	NA	unknown function
UHGV-0063156_26	UniRef90	UniRef90_UPI00098663CC	NA	NA
UHGV-0063156_26	eggNOG-mapper	203119.Cthe_1636	NA	NA
UHGV-0063156_26	Pfam	PF14192	NA	DUF4314
UHGV-0063156_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0063156_26	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0063156_28	eggNOG-mapper	445972.ANACOL_00624	NA	NA
UHGV-0063156_28	Structural annotation	PF14173	NA	NA
UHGV-0063156_29	PHROG	phrog_4709	NA	unknown function
UHGV-0063156_29	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-0063156_29	AcrCatalog	cluster_3300	NA	NA
UHGV-0063156_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0063156_31	UniRef90	UniRef90_A0A6N7VK86	Terminase	NA
UHGV-0063156_31	eggNOG-mapper	1089553.Tph_c23180	Phage Terminase	NA
UHGV-0063156_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0063156_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0063156_31	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0063156_31	Structural annotation	PF20441, PF05203, PF03354, MF_04145, MF_01420, NF005852, TIGR01547, COG4626	NA	NA
UHGV-0063156_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0063156_32	UniRef90	UniRef90_W6RU61	Phage portal protein, HK97 family	NA
UHGV-0063156_32	eggNOG-mapper	1216932.CM240_0673	Phage portal protein, HK97 family	NA
UHGV-0063156_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0063156_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0063156_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0063156_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0063156_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0063156_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0063156_33	UniRef90	UniRef90_A0A380EM16	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0063156_33	eggNOG-mapper	1216932.CM240_0674	Belongs to the peptidase S14 family	NA
UHGV-0063156_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0063156_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0063156_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0063156_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0063156_34	UniRef90	UniRef90_F6DMJ1	Phage major capsid protein, HK97 family	NA
UHGV-0063156_34	eggNOG-mapper	696281.Desru_3549	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0063156_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0063156_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0063156_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0063156_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0063156_35	PHROG	phrog_12102	NA	unknown function
UHGV-0063156_35	UniRef90	UniRef90_A0A7X7FI45	Head fiber protein	NA
UHGV-0063156_35	eggNOG-mapper	689781.AUJX01000031_gene111	NA	NA
UHGV-0063156_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0063156_36	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-0063156_36	eggNOG-mapper	1280681.AUJZ01000038_gene335	Phage gp6-like head-tail connector protein	NA
UHGV-0063156_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0063156_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0063156_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0063156_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0063156_37	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-0063156_37	eggNOG-mapper	994573.T472_0211940	head-tail adaptor	NA
UHGV-0063156_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0063156_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0063156_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0063156_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0063156_38	Structural annotation	PF05657	NA	NA
UHGV-0063156_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0063156_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0063156_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0063156_39	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0063156_40	PHROG	phrog_88	major tail protein	tail
UHGV-0063156_40	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-0063156_40	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-0063156_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0063156_40	COG	COG5276	NA	NA
UHGV-0063156_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0063156_43	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-0063156_43	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0063156_43	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-0063156_43	eggNOG-mapper	1289596.M1PKM6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0063156_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0063156_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0063156_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0063156_44	UniRef90	UniRef90_A0A1M5Y6F6	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0063156_44	eggNOG-mapper	1160721.RBI_I00403	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0063156_44	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0063156_44	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0063156_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0063156_45	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-0063156_45	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0063156_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0063156_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA