UHGV-0063158

Genome information

Genome length 32,865 bps

CDS count 50

Completeness 85.28% (medium-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063158
vOTU ID	vOTU-017906
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_73378
BioSample	SAMEA2338651
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.77
Jumbo phage	No

Genome content
Genome length	32,865 bps
GC content	42.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.56%
Average CDS length	619.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063158_1	eggNOG-mapper	1235800.C819_02253	NA	NA
UHGV-0063158_2	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0063158_2	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0063158_2	UniRef90	UniRef90_A0A373LVX6	HD domain-containing protein	NA
UHGV-0063158_2	eggNOG-mapper	97139.C824_00737	PFAM HD domain	NA
UHGV-0063158_2	Pfam	PF01966	HD domain	HD
UHGV-0063158_2	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0063158_2	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0063158_4	PHROG	phrog_15077	NA	unknown function
UHGV-0063158_4	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0063158_4	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0063158_4	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0063158_6	PHROG	phrog_7566	NA	unknown function
UHGV-0063158_6	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0063158_6	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0063158_7	PHROG	phrog_8470	NA	unknown function
UHGV-0063158_7	UniRef90	UniRef90_UPI0015E171DA	PcfJ domain-containing protein	NA
UHGV-0063158_7	eggNOG-mapper	411459.RUMOBE_00950	PcfJ-like protein	NA
UHGV-0063158_7	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0063158_7	Structural annotation	PF14284	NA	NA
UHGV-0063158_8	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0063158_8	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0063158_9	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0063158_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0063158_10	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0063158_10	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0063158_13	PHROG	phrog_11237	NA	unknown function
UHGV-0063158_13	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0063158_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0063158_14	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0063158_14	UniRef90	UniRef90_A0A2V2D6Q6	N6_Mtase domain-containing protein	NA
UHGV-0063158_14	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0063158_14	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0063158_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0063158_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0063158_14	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0063158_18	PHROG	phrog_750	NA	unknown function
UHGV-0063158_18	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0063158_18	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0063158_22	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0063158_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0063158_22	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0063158_22	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0063158_22	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0063158_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0063158_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0063158_24	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0063158_24	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0063158_24	UniRef90	UniRef90_A0A1M6B7T2	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0063158_24	eggNOG-mapper	410358.Mlab_0037	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0063158_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063158_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0063158_25	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0063158_27	PHROG	phrog_1220	head protein	head and packaging
UHGV-0063158_27	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0063158_27	eggNOG-mapper	1145276.T479_19910	NA	NA
UHGV-0063158_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0063158_28	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0063158_28	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0063158_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0063158_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0063158_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0063158_29	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0063158_29	eggNOG-mapper	428125.CLOLEP_01423	Phage tail protein	NA
UHGV-0063158_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0063158_29	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0063158_30	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0063158_30	PHROG	phrog_5218	NA	unknown function
UHGV-0063158_30	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0063158_30	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0063158_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0063158_30	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0063158_30	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0063158_32	PHROG	phrog_88	major tail protein	tail
UHGV-0063158_32	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0063158_32	eggNOG-mapper	1120971.AUCA01000066_gene599	Phage tail tube protein	NA
UHGV-0063158_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0063158_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0063158_33	Structural annotation	PF05657	NA	NA
UHGV-0063158_34	Structural annotation	TIGR01725	NA	NA
UHGV-0063158_35	UniRef90	UniRef90_A0A417W8T5	Head-tail adaptor protein	NA
UHGV-0063158_35	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0063158_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0063158_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0063158_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0063158_36	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0063158_36	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0063158_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0063158_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0063158_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0063158_37	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-0063158_37	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0063158_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0063158_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0063158_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0063158_37	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0063158_38	KOfam	K06904	NA	NA
UHGV-0063158_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0063158_38	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0063158_38	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0063158_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0063158_38	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0063158_38	COG	COG3740	Phage head maturation protease	NA
UHGV-0063158_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0063158_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0063158_39	UniRef90	UniRef90_R6Z5U3	Phage portal protein	NA
UHGV-0063158_39	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0063158_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0063158_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0063158_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0063158_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0063158_40	UniRef90	UniRef90_R7A0H4	Terminase	NA
UHGV-0063158_40	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0063158_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0063158_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0063158_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0063158_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0063158_44	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0063158_44	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0063158_44	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-0063158_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0063158_45	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0063158_45	UniRef90	UniRef90_A0A417W8X1	HNH endonuclease	NA
UHGV-0063158_45	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-0063158_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0063158_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0063158_45	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0063158_46	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0063158_46	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0063158_46	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0063158_46	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0063158_46	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0063158_46	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0063158_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0063158_47	PHROG	phrog_435	endolysin	lysis
UHGV-0063158_47	UniRef90	UniRef90_A0A6L5Y0L2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063158_47	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0063158_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0063158_47	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0063158_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063158_47	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0063158_48	PHROG	phrog_1863	NA	unknown function
UHGV-0063158_48	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0063158_49	PHROG	phrog_881	holin	lysis
UHGV-0063158_49	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0063158_49	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0063158_49	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0063158_49	Structural annotation	PF16938	NA	NA