UHGV-0063183

Genome information

Genome length 15,684 bps

CDS count 18

Completeness 93.92% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063183
vOTU ID	vOTU-009822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_86429
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.12
Jumbo phage	No

Genome content
Genome length	15,684 bps
GC content	38.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	88.47%
Average CDS length	773.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063183_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0063183_1	PHROG	phrog_435	endolysin	lysis
UHGV-0063183_1	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-0063183_1	eggNOG-mapper	537007.BLAHAN_05253	Ami_3	NA
UHGV-0063183_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0063183_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063183_1	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0063183_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0063183_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0063183_4	UniRef90	UniRef90_A0A843GYE4	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0063183_4	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0063183_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0063183_4	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0063183_6	Structural annotation	PF08977	NA	NA
UHGV-0063183_7	Structural annotation	PF17548	NA	NA
UHGV-0063183_8	Structural annotation	PF10991, MF_04153, NF004512, COG0629	NA	NA
UHGV-0063183_9	PHROG	phrog_199	holin	lysis
UHGV-0063183_9	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0063183_9	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0063183_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0063183_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0063183_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0063183_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0063183_10	UniRef90	UniRef90_A0A843FU40	Phage DNA encapsidation protein	NA
UHGV-0063183_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0063183_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0063183_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0063183_11	PHROG	phrog_20388	endolysin	lysis
UHGV-0063183_11	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063183_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0063183_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063183_11	Structural annotation	PF18013	NA	NA
UHGV-0063183_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0063183_13	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0063183_13	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0063183_13	Structural annotation	PF19821, PF07354, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0063183_14	PHROG	phrog_2248	tail protein	tail
UHGV-0063183_14	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0063183_14	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0063183_14	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0063183_14	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0063183_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0063183_15	PHROG	phrog_2038	upper collar connector	connector
UHGV-0063183_15	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-0063183_15	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0063183_15	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0063183_15	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0063183_16	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0063183_16	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA