UHGV-0063267

Genome information

Genome length 44,020 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063267
vOTU ID	vOTU-009080
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_74119
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.71
Jumbo phage	No

Genome content
Genome length	44,020 bps
GC content	50.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.71%
Average CDS length	722.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063267_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0063267_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0063267_1	UniRef90	UniRef90_A0A1M6L678	Phage integrase family protein	NA
UHGV-0063267_1	eggNOG-mapper	742766.HMPREF9455_03139	Phage integrase SAM-like domain	NA
UHGV-0063267_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0063267_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0063267_1	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0063267_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0063267_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063267_3	UniRef90	UniRef90_UPI000E4E038E	type I restriction endonuclease	NA
UHGV-0063267_3	eggNOG-mapper	445970.ALIPUT_01215	Type I restriction enzyme HsdR protein N-terminal domain protein	NA
UHGV-0063267_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0063267_3	COG	COG4748	NA	NA
UHGV-0063267_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0063267_4	eggNOG-mapper	1236542.BALM01000015_gene1067	NA	NA
UHGV-0063267_4	Structural annotation	PF19631	NA	NA
UHGV-0063267_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0063267_5	UniRef90	UniRef90_G5H733	HTH cro/C1-type domain-containing protein	NA
UHGV-0063267_5	eggNOG-mapper	742725.HMPREF9450_00876	Transcriptional regulator	NA
UHGV-0063267_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0063267_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0063267_5	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0063267_7	UniRef90	UniRef90_A0A1Y4C7I0	HTH luxR-type domain-containing protein	NA
UHGV-0063267_7	eggNOG-mapper	272559.BF9343_2244	helix_turn_helix, Lux Regulon	NA
UHGV-0063267_7	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-0063267_8	PHROG	phrog_17289	NA	unknown function
UHGV-0063267_8	eggNOG-mapper	997884.HMPREF1068_03099	NA	NA
UHGV-0063267_8	Structural annotation	PF11112	NA	NA
UHGV-0063267_12	UniRef90	UniRef90_A0A645DB76	Fib_succ_major domain-containing protein	NA
UHGV-0063267_12	eggNOG-mapper	1211813.CAPH01000002_gene1135	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0063267_12	Pfam	PF07603	NA	DUF1566
UHGV-0063267_12	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0063267_12	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-0063267_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0063267_13	UniRef90	UniRef90_UPI000D103AB5	ATP-binding protein	NA
UHGV-0063267_13	eggNOG-mapper	1122931.AUAE01000005_gene3279	AAA domain	NA
UHGV-0063267_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0063267_13	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0063267_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0063267_14	PHROG	phrog_35319	NA	unknown function
UHGV-0063267_14	UniRef90	UniRef90_UPI000D0F1C31	HNH endonuclease	NA
UHGV-0063267_14	eggNOG-mapper	762984.HMPREF9445_00148	NA	NA
UHGV-0063267_14	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-0063267_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0063267_16	UniRef90	UniRef90_UPI0008D9D600	recombination protein NinB	NA
UHGV-0063267_16	eggNOG-mapper	357276.EL88_08500	NA	NA
UHGV-0063267_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0063267_17	PHROG	phrog_26490	NA	unknown function
UHGV-0063267_17	eggNOG-mapper	411476.BACOVA_03887	NA	NA
UHGV-0063267_18	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0063267_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0063267_18	UniRef90	UniRef90_D1K9K1	Helicase C-terminal domain protein	NA
UHGV-0063267_18	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0063267_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0063267_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0063267_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0063267_18	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0063267_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0063267_19	UniRef90	UniRef90_A0A4P8I8N3	DnaD domain protein	NA
UHGV-0063267_19	eggNOG-mapper	742767.HMPREF9456_03267	NA	NA
UHGV-0063267_19	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0063267_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0063267_20	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0063267_20	UniRef90	UniRef90_UPI001595AE58	ATP-binding protein	NA
UHGV-0063267_20	eggNOG-mapper	1235788.C802_04559	DNA-dependent DNA replication	NA
UHGV-0063267_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0063267_20	Structural annotation	PF01695, MF_03025, NF005992, COG1484	NA	NA
UHGV-0063267_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0063267_22	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0063267_22	UniRef90	UniRef90_UPI0018AB7658	DNA cytosine methyltransferase	NA
UHGV-0063267_22	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0063267_22	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0063267_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0063267_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0063267_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0063267_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0063267_23	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0063267_23	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-0063267_23	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-0063267_23	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0063267_23	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0063267_24	UniRef90	UniRef90_A0A645DB76	Fib_succ_major domain-containing protein	NA
UHGV-0063267_24	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-0063267_25	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-0063267_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0063267_25	UniRef90	UniRef90_A0A143XNZ9	PAPS_reduct domain-containing protein	NA
UHGV-0063267_25	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0063267_25	PADLOC	SspD_00001	SspD	SSP
UHGV-0063267_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0063267_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0063267_25	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0063267_28	PHROG	phrog_10841	NA	unknown function
UHGV-0063267_31	PHROG	phrog_8684	NA	unknown function
UHGV-0063267_31	UniRef90	UniRef90_F8X2E0	YopX domain-containing protein	NA
UHGV-0063267_31	eggNOG-mapper	742767.HMPREF9456_02399	YopX protein	NA
UHGV-0063267_31	Pfam	PF09643	YopX protein	YopX
UHGV-0063267_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0063267_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0063267_32	PHROG	phrog_874	NA	unknown function
UHGV-0063267_32	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0063267_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0063267_33	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0063267_33	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0063267_33	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0063267_34	PHROG	phrog_824	NA	unknown function
UHGV-0063267_34	UniRef90	UniRef90_A0A1Y3WEY5	Nuclease	NA
UHGV-0063267_34	eggNOG-mapper	1122931.AUAE01000005_gene3274	VRR_NUC	NA
UHGV-0063267_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0063267_34	Structural annotation	PF08774	NA	NA
UHGV-0063267_35	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-0063267_35	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0063267_36	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0063267_36	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-0063267_36	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-0063267_36	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0063267_36	Structural annotation	PF07141	NA	NA
UHGV-0063267_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0063267_37	UniRef90	UniRef90_A0A8J7UHC8	Phage terminase large subunit	NA
UHGV-0063267_37	eggNOG-mapper	742725.HMPREF9450_00100	domain protein	NA
UHGV-0063267_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0063267_37	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0063267_37	COG	COG5410	NA	NA
UHGV-0063267_37	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0063267_38	PHROG	phrog_28240	NA	unknown function
UHGV-0063267_38	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0063267_38	eggNOG-mapper	1236514.BAKL01000015_gene1634	NA	NA
UHGV-0063267_39	PHROG	phrog_33245	NA	unknown function
UHGV-0063267_39	eggNOG-mapper	1122931.AUAE01000005_gene3264	NA	NA
UHGV-0063267_39	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0063267_40	eggNOG-mapper	357276.EL88_08400	NA	NA
UHGV-0063267_41	PHROG	phrog_37065	NA	unknown function
UHGV-0063267_41	eggNOG-mapper	357276.EL88_08395	NA	NA
UHGV-0063267_41	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0063267_42	PHROG	phrog_33698	NA	unknown function
UHGV-0063267_42	eggNOG-mapper	1236514.BAKL01000015_gene1630	NA	NA
UHGV-0063267_42	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0063267_43	PHROG	phrog_37298	NA	unknown function
UHGV-0063267_43	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0063267_43	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0063267_43	COG	COG1511	NA	NA
UHGV-0063267_43	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0063267_44	PHROG	phrog_17790	NA	unknown function
UHGV-0063267_44	UniRef90	UniRef90_A0A7W7AUU3	Aminopeptidase N	NA
UHGV-0063267_44	eggNOG-mapper	1122981.AUME01000026_gene523	NA	NA
UHGV-0063267_45	UniRef90	UniRef90_UPI00050A273C	helix-turn-helix transcriptional regulator	NA
UHGV-0063267_45	eggNOG-mapper	1121887.AUDK01000033_gene1451	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0063267_45	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0063267_45	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0063267_46	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0063267_46	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0063267_46	UniRef90	UniRef90_A0A373ZMP4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0063267_46	eggNOG-mapper	1122931.AUAE01000005_gene3257	Clp protease	NA
UHGV-0063267_46	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0063267_46	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0063267_46	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0063267_47	PHROG	phrog_38780	NA	unknown function
UHGV-0063267_47	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0063267_47	eggNOG-mapper	742767.HMPREF9456_03365	NA	NA
UHGV-0063267_47	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0063267_48	PHROG	phrog_21217	NA	unknown function
UHGV-0063267_48	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-0063267_49	PHROG	phrog_37138	NA	unknown function
UHGV-0063267_49	eggNOG-mapper	1347393.HG726026_gene2528	NA	NA
UHGV-0063267_50	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0063267_50	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0063267_50	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0063267_51	PHROG	phrog_24616	NA	unknown function
UHGV-0063267_51	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0063267_51	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0063267_51	Structural annotation	PF20459	NA	NA
UHGV-0063267_52	PHROG	phrog_38707	NA	unknown function
UHGV-0063267_52	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0063267_53	UniRef90	UniRef90_D7IT91	Glycosyltransferase	NA
UHGV-0063267_53	eggNOG-mapper	762984.HMPREF9445_00187	NA	NA
UHGV-0063267_53	Structural annotation	COG3371	NA	NA
UHGV-0063267_54	PHROG	phrog_32423	NA	unknown function
UHGV-0063267_54	UniRef90	UniRef90_UPI0011DCF0C5	cell division protein ZapB	NA
UHGV-0063267_54	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0063267_55	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0063267_55	PHROG	phrog_894	endolysin	lysis
UHGV-0063267_55	UniRef90	UniRef90_UPI0008DA8D9F	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0063267_55	eggNOG-mapper	1501391.LG35_04555	Peptidase M15	NA
UHGV-0063267_55	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0063267_55	COG	COG3108	NA	NA
UHGV-0063267_55	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0063267_56	PHROG	phrog_26448	NA	unknown function
UHGV-0063267_56	eggNOG-mapper	742725.HMPREF9450_02132	NA	NA
UHGV-0063267_56	Pfam	PF20647	NA	DUF6808
UHGV-0063267_56	Structural annotation	PF20647	NA	NA
UHGV-0063267_57	UniRef90	UniRef90_UPI0002D80B51	FimB/Mfa2 family fimbrial subunit	NA
UHGV-0063267_57	eggNOG-mapper	1211813.CAPH01000005_gene1745	Fimbrillin-A associated anchor proteins Mfa1 and Mfa2	NA
UHGV-0063267_57	Pfam	PF08842	Fimbrillin-A associated anchor proteins Mfa1 and Mfa2	Mfa2
UHGV-0063267_58	UniRef90	UniRef90_UPI00030AB308	NA	NA
UHGV-0063267_58	eggNOG-mapper	1211813.CAPH01000005_gene1746	NA	NA
UHGV-0063267_58	Pfam	PF06321	Major fimbrial subunit protein (FimA)	P_gingi_FimA