UHGV-0063402

Genome information

Genome length 19,190 bps

CDS count 28

Completeness 53.82% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063402
vOTU ID	vOTU-041820
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_103212
BioSample	SAMEA2466899
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.41
Jumbo phage	No

Genome content
Genome length	19,190 bps
GC content	44.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	92.45%
Average CDS length	638.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063402_1	eggNOG-mapper	717606.PaecuDRAFT_3120	Phage minor capsid protein 2	NA
UHGV-0063402_1	COG	COG2369	NA	NA
UHGV-0063402_2	Structural annotation	PF12305	NA	NA
UHGV-0063402_3	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0063402_3	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-0063402_3	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0063402_3	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0063402_3	Structural annotation	PF06810	NA	NA
UHGV-0063402_4	PHROG	phrog_544	major head protein	head and packaging
UHGV-0063402_4	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-0063402_4	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0063402_4	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0063402_4	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0063402_5	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0063402_5	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0063402_5	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0063402_6	PHROG	phrog_3366	NA	unknown function
UHGV-0063402_6	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0063402_6	Pfam	PF20536	NA	DUF6751
UHGV-0063402_6	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0063402_7	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0063402_7	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-0063402_7	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0063402_7	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0063402_7	Structural annotation	PF11114	NA	NA
UHGV-0063402_8	PHROG	phrog_3266	tail completion	connector
UHGV-0063402_8	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0063402_8	Structural annotation	PF20765	NA	NA
UHGV-0063402_9	PHROG	phrog_3099	NA	unknown function
UHGV-0063402_9	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0063402_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0063402_10	PHROG	phrog_11299	NA	unknown function
UHGV-0063402_10	Structural annotation	PF20378	NA	NA
UHGV-0063402_11	PHROG	phrog_706	NA	unknown function
UHGV-0063402_11	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0063402_11	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0063402_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0063402_11	Structural annotation	PF06854	NA	NA
UHGV-0063402_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0063402_12	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0063402_12	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0063402_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0063402_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0063402_13	PHROG	phrog_1194	NA	unknown function
UHGV-0063402_13	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0063402_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0063402_14	PHROG	phrog_6616	tail protein	tail
UHGV-0063402_14	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0063402_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0063402_18	PHROG	phrog_13256	NA	unknown function
UHGV-0063402_18	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0063402_19	KOfam	K07273	acm; lysozyme	NA
UHGV-0063402_19	PHROG	phrog_291	endolysin	lysis
UHGV-0063402_19	UniRef90	UniRef90_W0U9I6	Endolysin (Glycoside Hydrolase Family 25 protein )	NA
UHGV-0063402_19	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-0063402_19	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0063402_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0063402_19	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0063402_21	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0063402_21	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0063402_21	UniRef90	UniRef90_W0U9G5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0063402_21	eggNOG-mapper	1160721.RBI_II00519	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0063402_21	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0063402_21	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0063402_21	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0063402_21	COG	COG0338	DNA-adenine methylase	NA
UHGV-0063402_21	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0063402_22	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0063402_22	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0063402_22	UniRef90	UniRef90_W0U882	HTH cro/C1-type domain-containing protein	NA
UHGV-0063402_22	eggNOG-mapper	1160721.RBI_II00518	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0063402_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0063402_22	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0063402_22	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0063402_23	KOfam	K06413	spoVK; stage V sporulation protein K	NA
UHGV-0063402_23	PHROG	phrog_4339	NA	unknown function
UHGV-0063402_23	UniRef90	UniRef90_A0A1C6CBZ0	Proteasome-activating nucleotidase	NA
UHGV-0063402_23	eggNOG-mapper	1160721.RBI_I00197	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0063402_23	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0063402_23	Pfam	PF17866	AAA lid domain	AAA_lid_6
UHGV-0063402_23	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0063402_25	eggNOG-mapper	1160721.RBI_I00199	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	NA
UHGV-0063402_25	COG	COG0593	Chromosomal replication initiation ATPase DnaA	NA
UHGV-0063402_28	eggNOG-mapper	1160721.RBI_I00486	COG3209 Rhs family protein	NA
UHGV-0063402_28	Pfam	PF18884	Bacterial TSP3 repeat	TSP3_bac
UHGV-0063402_28	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA