UHGV-0063432

Genome information

Genome length 31,407 bps

CDS count 47

Completeness 57.45% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063432
vOTU ID	vOTU-031301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_100852
BioSample	SAMEA2466968
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.64
Jumbo phage	No

Genome content
Genome length	31,407 bps
GC content	43.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.71%
Average CDS length	615.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063432_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0063432_1	PHROG	phrog_435	endolysin	lysis
UHGV-0063432_1	UniRef90	UniRef90_A0A1I6LPA9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063432_1	eggNOG-mapper	946235.CAER01000065_gene2429	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0063432_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0063432_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0063432_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0063432_1	Structural annotation	PF01520, PF08239, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0063432_2	PHROG	phrog_962	holin	lysis
UHGV-0063432_2	UniRef90	UniRef90_A0A134AEP1	Holin, phage phi LC3 family	NA
UHGV-0063432_2	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0063432_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0063432_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0063432_2	COG	COG5546	NA	NA
UHGV-0063432_2	Structural annotation	COG5546	NA	NA
UHGV-0063432_3	PHROG	phrog_1863	NA	unknown function
UHGV-0063432_3	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0063432_5	PHROG	phrog_16573	NA	unknown function
UHGV-0063432_5	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0063432_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0063432_6	UniRef90	UniRef90_A0A1M6KY09	Phage minor structural protein, N-terminal region	NA
UHGV-0063432_6	eggNOG-mapper	929506.CbC4_1228	Phage minor structural protein	NA
UHGV-0063432_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0063432_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0063432_6	COG	COG4926	Phage-related protein	NA
UHGV-0063432_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0063432_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0063432_7	UniRef90	UniRef90_UPI001623B610	phage tail protein	NA
UHGV-0063432_7	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-0063432_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0063432_8	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0063432_8	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0063432_8	UniRef90	UniRef90_A0A3G4YYJ9	Phage tail tape measure protein	NA
UHGV-0063432_8	eggNOG-mapper	764299.STRIC_0111	Phage-related minor tail protein	NA
UHGV-0063432_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0063432_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0063432_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0063432_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0063432_10	PHROG	phrog_88	major tail protein	tail
UHGV-0063432_10	UniRef90	UniRef90_A0A897H1J0	Phage tail protein	NA
UHGV-0063432_10	eggNOG-mapper	545697.HMPREF0216_00917	phage major tail protein	NA
UHGV-0063432_10	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0063432_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0063432_10	COG	COG5492	NA	NA
UHGV-0063432_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0063432_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0063432_13	PHROG	phrog_19734	NA	unknown function
UHGV-0063432_13	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-0063432_14	PHROG	phrog_749	NA	unknown function
UHGV-0063432_14	eggNOG-mapper	1158607.UAU_01033	NA	NA
UHGV-0063432_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0063432_15	UniRef90	UniRef90_UPI0008304135	phage major capsid protein	NA
UHGV-0063432_15	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0063432_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0063432_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0063432_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0063432_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0063432_16	PHROG	phrog_16951	NA	unknown function
UHGV-0063432_16	eggNOG-mapper	428125.CLOLEP_03662	NA	NA
UHGV-0063432_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0063432_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0063432_17	UniRef90	UniRef90_UPI001A9A8447	phage portal protein	NA
UHGV-0063432_17	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0063432_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0063432_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0063432_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0063432_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0063432_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0063432_18	UniRef90	UniRef90_UPI001C46A542	terminase large subunit	NA
UHGV-0063432_18	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0063432_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0063432_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0063432_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0063432_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0063432_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0063432_19	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0063432_19	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0063432_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0063432_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0063432_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063432_20	UniRef90	UniRef90_A0A139CWY3	HNHc domain-containing protein	NA
UHGV-0063432_20	eggNOG-mapper	1211817.CCAT010000008_gene937	HNH endonuclease	NA
UHGV-0063432_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0063432_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0063432_22	PHROG	phrog_24518	NA	unknown function
UHGV-0063432_25	PHROG	phrog_3136	NA	unknown function
UHGV-0063432_25	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0063432_25	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0063432_28	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0063432_28	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0063432_28	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0063432_28	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0063432_28	PADLOC	MTase_I_00002	Type I methyltransferase	RM
UHGV-0063432_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0063432_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0063432_28	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0063432_29	PHROG	phrog_15609	NA	unknown function
UHGV-0063432_29	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0063432_29	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0063432_30	PHROG	phrog_8470	NA	unknown function
UHGV-0063432_30	UniRef90	UniRef90_UPI00164B8CC7	PcfJ domain-containing protein	NA
UHGV-0063432_30	eggNOG-mapper	693746.OBV_25400	PcfJ-like protein	NA
UHGV-0063432_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0063432_30	Structural annotation	PF14284	NA	NA
UHGV-0063432_31	PHROG	phrog_38338	NA	unknown function
UHGV-0063432_31	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0063432_31	eggNOG-mapper	1514668.JOOA01000001_gene227	NA	NA
UHGV-0063432_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0063432_32	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0063432_32	eggNOG-mapper	1514668.JOOA01000001_gene223	NA	NA
UHGV-0063432_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0063432_37	PHROG	phrog_28990	NA	unknown function
UHGV-0063432_41	PHROG	phrog_12732	NA	unknown function
UHGV-0063432_42	UniRef90	UniRef90_A0A3D4T7E0	XRE family transcriptional regulator	NA
UHGV-0063432_42	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0063432_42	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0063432_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0063432_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0063432_43	UniRef90	UniRef90_A0A173V842	Transcriptional repressor DicA	NA
UHGV-0063432_43	eggNOG-mapper	645991.Sgly_0310	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0063432_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063432_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0063432_43	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0063432_45	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0063432_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0063432_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0063432_47	UniRef90	UniRef90_A0A843H3J5	Recombinase family protein (Fragment)	NA
UHGV-0063432_47	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0063432_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0063432_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0063432_47	Structural annotation	PF00239, NF033518, COG1961	NA	NA