UHGV-0063490

Genome information

Genome length 40,076 bps

CDS count 66

Completeness 89.53% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063490
vOTU ID	vOTU-025441
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_75794
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.98
Jumbo phage	No

Genome content
Genome length	40,076 bps
GC content	51.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.25%
Average CDS length	564.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063490_1	UniRef90	UniRef90_A0A845R4W0	XRE family transcriptional regulator	NA
UHGV-0063490_1	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0063490_1	Structural annotation	PF13443, NF000090, COG1813	NA	NA
UHGV-0063490_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0063490_2	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0063490_2	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0063490_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0063490_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0063490_2	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0063490_3	PHROG	phrog_87	metallo-protease	other
UHGV-0063490_3	UniRef90	UniRef90_UPI001899699D	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0063490_3	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0063490_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0063490_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0063490_4	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0063490_4	PHROG	phrog_19856	NA	unknown function
UHGV-0063490_4	UniRef90	UniRef90_A0A401WNJ3	Mrr_cat domain-containing protein	NA
UHGV-0063490_4	eggNOG-mapper	1280680.AUJU01000007_gene2172	Restriction endonuclease	NA
UHGV-0063490_4	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0063490_4	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0063490_4	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0063490_4	Structural annotation	PF04471, MF_00722, NF040854, COG1787	NA	NA
UHGV-0063490_6	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0063490_6	PHROG	phrog_15286	NA	unknown function
UHGV-0063490_6	UniRef90	UniRef90_A0A1C5N3L4	Bro-N domain-containing protein	NA
UHGV-0063490_6	eggNOG-mapper	862971.SANR_1321	NA	NA
UHGV-0063490_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0063490_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0063490_6	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0063490_7	KOfam	K14059	int; integrase	NA
UHGV-0063490_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0063490_7	UniRef90	UniRef90_A0A1C5N3H1	Integrase	NA
UHGV-0063490_7	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0063490_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0063490_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0063490_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0063490_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0063490_8	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0063490_9	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0063490_11	PHROG	phrog_16490	NA	unknown function
UHGV-0063490_11	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0063490_13	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0063490_16	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0063490_16	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0063490_16	Structural annotation	PF16509, MF_00674, NF008895, COG2739	NA	NA
UHGV-0063490_17	PHROG	phrog_21357	endolysin	lysis
UHGV-0063490_17	UniRef90	UniRef90_UPI00067EF636	CHAP domain-containing protein	NA
UHGV-0063490_17	eggNOG-mapper	1378168.N510_02471	NLP P60 protein	NA
UHGV-0063490_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0063490_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0063490_17	Structural annotation	PF00877, TIGR02594, COG0791	NA	NA
UHGV-0063490_18	PHROG	phrog_18218	NA	unknown function
UHGV-0063490_18	Structural annotation	PF06946	NA	NA
UHGV-0063490_19	UniRef90	UniRef90_A0A845RAD8	LapA family protein	NA
UHGV-0063490_19	eggNOG-mapper	1203606.HMPREF1526_00254	NA	NA
UHGV-0063490_20	PHROG	phrog_937	hemolysin	other
UHGV-0063490_20	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0063490_21	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0063490_21	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0063490_23	PHROG	phrog_5302	tail protein	tail
UHGV-0063490_23	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0063490_23	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0063490_23	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0063490_23	Structural annotation	PF02368, MF_04116, NF010681, COG1262, COG1361	NA	NA
UHGV-0063490_24	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0063490_24	PHROG	phrog_819	tail protein	tail
UHGV-0063490_24	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0063490_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0063490_24	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0063490_26	PHROG	phrog_32744	NA	unknown function
UHGV-0063490_26	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0063490_26	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0063490_27	PHROG	phrog_1194	NA	unknown function
UHGV-0063490_27	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0063490_27	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0063490_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0063490_28	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0063490_28	COG	COG1511	NA	NA
UHGV-0063490_28	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0063490_29	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0063490_29	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0063490_30	PHROG	phrog_706	NA	unknown function
UHGV-0063490_30	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0063490_30	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0063490_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0063490_30	Structural annotation	PF06854	NA	NA
UHGV-0063490_31	PHROG	phrog_11299	NA	unknown function
UHGV-0063490_31	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0063490_31	Structural annotation	PF10666	NA	NA
UHGV-0063490_32	PHROG	phrog_3099	NA	unknown function
UHGV-0063490_32	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0063490_32	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0063490_33	PHROG	phrog_3266	tail completion	connector
UHGV-0063490_33	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0063490_33	Structural annotation	PF12691	NA	NA
UHGV-0063490_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0063490_34	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0063490_34	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0063490_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0063490_34	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0063490_35	PHROG	phrog_3366	NA	unknown function
UHGV-0063490_35	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0063490_35	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0063490_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0063490_36	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0063490_36	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0063490_37	UniRef90	UniRef90_A0A8J6J3F8	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-0063490_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0063490_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0063490_38	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0063490_38	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0063490_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0063490_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0063490_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0063490_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0063490_39	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0063490_39	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0063490_39	AcrCatalog	cluster_74817	NA	NA
UHGV-0063490_40	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0063490_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0063490_41	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0063490_41	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0063490_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0063490_41	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0063490_41	COG	COG2369	NA	NA
UHGV-0063490_41	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0063490_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0063490_42	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0063490_42	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0063490_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0063490_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0063490_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0063490_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0063490_43	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-0063490_43	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0063490_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0063490_43	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0063490_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0063490_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0063490_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0063490_44	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-0063490_44	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0063490_44	Structural annotation	PF13542	NA	NA
UHGV-0063490_47	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0063490_47	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0063490_47	UniRef90	UniRef90_A0A645G8B4	HTH cro/C1-type domain-containing protein	NA
UHGV-0063490_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063490_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0063490_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0063490_49	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0063490_49	UniRef90	UniRef90_A0A1C6B6A0	NA	NA
UHGV-0063490_49	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0063490_49	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0063490_49	Structural annotation	PF18909	NA	NA
UHGV-0063490_53	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063490_53	UniRef90	UniRef90_A0A416U4U8	Endonuclease	NA
UHGV-0063490_53	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0063490_53	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0063490_53	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0063490_53	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0063490_55	PHROG	phrog_38832	NA	unknown function
UHGV-0063490_58	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063490_58	UniRef90	UniRef90_UPI0013141DAE	NUMOD4 domain-containing protein	NA
UHGV-0063490_58	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0063490_58	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0063490_58	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0063490_58	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0063490_58	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0063490_61	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0063490_61	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0063490_62	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0063490_62	UniRef90	UniRef90_UPI0018AC14ED	Lar family restriction alleviation protein	NA
UHGV-0063490_62	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0063490_62	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0063490_62	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0063490_63	Structural annotation	PF20987	NA	NA
UHGV-0063490_65	UniRef90	UniRef90_A0A1C6D5Y2	Inhibitor_G39P domain-containing protein	NA
UHGV-0063490_65	Structural annotation	PF11417	NA	NA
UHGV-0063490_66	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0063490_66	eggNOG-mapper	1232453.BAIF02000057_gene1144	NA	NA
UHGV-0063490_66	COG	COG3935	DNA replication protein DnaD	NA