UHGV-0063602

Genome information

Genome length 24,782 bps

CDS count 44

Completeness 62.04% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063602
vOTU ID	vOTU-032135
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_103400
BioSample	SAMEA2466906
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.91
Jumbo phage	No

Genome content
Genome length	24,782 bps
GC content	41.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.33%
Average CDS length	525.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063602_1	PHROG	phrog_11745	NA	unknown function
UHGV-0063602_1	UniRef90	UniRef90_A0A1E9BP49	SEFIR domain-containing protein	NA
UHGV-0063602_1	eggNOG-mapper	547042.BACCOPRO_02043	TIR domain	NA
UHGV-0063602_1	Pfam	PF13676	TIR domain	TIR_2
UHGV-0063602_1	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0063602_2	eggNOG-mapper	547042.BACCOPRO_02044	Late control gene D protein	NA
UHGV-0063602_2	COG	COG3500	NA	NA
UHGV-0063602_3	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0063602_3	UniRef90	UniRef90_U2N3T6	NA	NA
UHGV-0063602_3	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0063602_3	COG	COG2369	NA	NA
UHGV-0063602_3	Structural annotation	PF06152	NA	NA
UHGV-0063602_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0063602_4	UniRef90	UniRef90_A0A173W966	Phage portal protein, SPP1 family	NA
UHGV-0063602_4	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0063602_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0063602_4	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0063602_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0063602_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0063602_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0063602_5	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0063602_5	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0063602_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0063602_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0063602_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0063602_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0063602_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0063602_6	PHROG	phrog_2412	NA	unknown function
UHGV-0063602_6	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0063602_6	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0063602_6	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0063602_7	PHROG	phrog_9479	NA	unknown function
UHGV-0063602_7	Structural annotation	PF15529	NA	NA
UHGV-0063602_8	PHROG	phrog_5057	NA	unknown function
UHGV-0063602_10	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0063602_10	UniRef90	UniRef90_A0A173W6N8	ParB-like nuclease domain	NA
UHGV-0063602_10	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0063602_10	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0063602_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0063602_10	Pfam	PF14386	NA	DUF4417
UHGV-0063602_10	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0063602_10	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0063602_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0063602_12	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0063602_12	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0063602_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0063602_12	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0063602_13	PHROG	phrog_17690	NA	unknown function
UHGV-0063602_13	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0063602_13	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0063602_15	PHROG	phrog_9300	NA	unknown function
UHGV-0063602_17	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0063602_18	Structural annotation	PF17655, MF_00791, TIGR03780, COG2967	NA	NA
UHGV-0063602_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0063602_20	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0063602_20	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0063602_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0063602_20	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0063602_21	PHROG	phrog_9804	NA	unknown function
UHGV-0063602_21	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-0063602_21	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-0063602_21	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0063602_21	Structural annotation	PF11417	NA	NA
UHGV-0063602_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0063602_22	UniRef90	UniRef90_A0A822LMB7	NA	NA
UHGV-0063602_22	eggNOG-mapper	1256908.HMPREF0373_00661	NA	NA
UHGV-0063602_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0063602_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0063602_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0063602_23	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0063602_23	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0063602_23	Pfam	PF06356	NA	DUF1064
UHGV-0063602_23	Structural annotation	PF06356	NA	NA
UHGV-0063602_24	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0063602_24	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0063602_24	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-0063602_24	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0063602_24	Pfam	PF03837	RecT family	RecT
UHGV-0063602_24	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0063602_24	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0063602_24	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0063602_27	PHROG	phrog_674	NA	unknown function
UHGV-0063602_27	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-0063602_27	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0063602_27	Pfam	PF07083	NA	DUF1351
UHGV-0063602_27	Structural annotation	PF07083	NA	NA
UHGV-0063602_28	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063602_28	UniRef90	UniRef90_A0A173W7Z3	Putative phage-type endonuclease	NA
UHGV-0063602_28	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0063602_28	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0063602_28	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0063602_28	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0063602_28	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0063602_30	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0063602_30	Structural annotation	PF20063	NA	NA
UHGV-0063602_31	UniRef90	UniRef90_A0A173W999	Helix-turn-helix domain	NA
UHGV-0063602_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063602_31	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0063602_39	UniRef90	UniRef90_A0A416ZXQ1	NA	NA
UHGV-0063602_39	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0063602_39	Pfam	PF05339	NA	DUF739
UHGV-0063602_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0063602_39	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0063602_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0063602_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0063602_40	UniRef90	UniRef90_A0A416ZY02	XRE family transcriptional regulator	NA
UHGV-0063602_40	eggNOG-mapper	626523.GCWU000342_01050	Helix-turn-helix	NA
UHGV-0063602_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063602_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0063602_40	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0063602_42	PHROG	phrog_20886	NA	unknown function
UHGV-0063602_42	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0063602_42	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0063602_42	Structural annotation	PF06114	NA	NA
UHGV-0063602_43	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0063602_43	UniRef90	UniRef90_R7HVT4	Abortive infection bacteriophage resistance protein	NA
UHGV-0063602_43	eggNOG-mapper	397288.C806_00111	Abi-like protein	NA
UHGV-0063602_43	PADLOC	AbiD	AbiD	Abi
UHGV-0063602_43	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0063602_43	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0063602_43	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0063602_44	KOfam	K14059	int; integrase	NA
UHGV-0063602_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0063602_44	UniRef90	UniRef90_A0A3A6JBV3	Site-specific integrase	NA
UHGV-0063602_44	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0063602_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0063602_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0063602_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA