UHGV-0063665

Genome information

Genome length 37,349 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063665
vOTU ID	vOTU-045053
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_97373
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3
Jumbo phage	No

Genome content
Genome length	37,349 bps
GC content	29.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	88.90%
Average CDS length	563.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063665_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0063665_1	PHROG	phrog_19299	terminase large subunit	head and packaging
UHGV-0063665_1	UniRef90	UniRef90_A0A496CW25	Replicative DNA helicase	NA
UHGV-0063665_1	eggNOG-mapper	1121116.KB894765_gene730	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0063665_1	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0063665_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0063665_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-0063665_3	Structural annotation	PF01096, TIGR04165, COG3478	NA	NA
UHGV-0063665_5	Pfam	PF01435	Peptidase family M48	Peptidase_M48
UHGV-0063665_5	Structural annotation	PF01435, MF_00997, NF002775, COG0501	NA	NA
UHGV-0063665_13	KOfam	K14989	salR; two-component system, NarL family, secretion system response regulator SalR	NA
UHGV-0063665_13	UniRef90	UniRef90_A0A4Q6DK02	LuxR family transcriptional regulator	NA
UHGV-0063665_13	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0063665_13	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0063665_17	Structural annotation	PF12098, MF_00360, NF041095, COG0347	NA	NA
UHGV-0063665_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0063665_20	UniRef90	UniRef90_UPI001C129E7D	terminase small subunit	NA
UHGV-0063665_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0063665_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0063665_21	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063665_21	UniRef90	UniRef90_UPI0010702E37	HNH endonuclease	NA
UHGV-0063665_21	eggNOG-mapper	646529.Desaci_1292	HNH endonuclease	NA
UHGV-0063665_21	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0063665_21	Pfam	PF00847	AP2 domain	AP2
UHGV-0063665_21	Structural annotation	PF10729, PF13392	NA	NA
UHGV-0063665_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0063665_23	PHROG	phrog_10250	NA	unknown function
UHGV-0063665_23	UniRef90	UniRef90_K2E107	Terminase_3 domain-containing protein	NA
UHGV-0063665_23	eggNOG-mapper	1150626.PHAMO_80072	Terminase-like family	NA
UHGV-0063665_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0063665_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0063665_24	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0063665_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0063665_28	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063665_28	UniRef90	UniRef90_A0A1R4A4H1	Homolog to phage Thibault protein Gp148/Gp103	NA
UHGV-0063665_28	eggNOG-mapper	198214.SF2494	HNH endonuclease	NA
UHGV-0063665_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0063665_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-0063665_29	UniRef90	UniRef90_A0A4Y8KD91	Coat protein	NA
UHGV-0063665_29	eggNOG-mapper	1123405.AUMM01000039_gene151	P22 coat protein-protein 5 domain protein	NA
UHGV-0063665_31	COG	COG1749	Flagellar hook protein FlgE	NA
UHGV-0063665_31	Structural annotation	PF11134, MF_00923, NF010237, COG4257	NA	NA
UHGV-0063665_32	Pfam	PF13420	Acetyltransferase (GNAT) domain	Acetyltransf_4
UHGV-0063665_32	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0063665_36	Structural annotation	PF21567, PF18573	NA	NA
UHGV-0063665_37	Structural annotation	PF10651, NF038114	NA	NA
UHGV-0063665_39	Structural annotation	PF07233, MF_00791, NF003967, COG5633	NA	NA
UHGV-0063665_40	PHROG	phrog_17779	NA	unknown function
UHGV-0063665_40	UniRef90	UniRef90_UPI00157632EC	protease	NA
UHGV-0063665_40	eggNOG-mapper	756282.M4SNB6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0063665_40	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0063665_43	Structural annotation	NF008552	NA	NA
UHGV-0063665_49	PHROG	phrog_31336	NA	unknown function
UHGV-0063665_49	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0063665_53	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0063665_53	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0063665_53	UniRef90	UniRef90_A0A2E8AAG4	53EXOc domain-containing protein	NA
UHGV-0063665_53	eggNOG-mapper	665942.HMPREF1022_03272	5'-3' exonuclease, N-terminal resolvase-like domain	NA
UHGV-0063665_53	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0063665_53	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0063665_53	Structural annotation	PF02739, PF01367, MF_01192, NF011545, COG0258	NA	NA
UHGV-0063665_54	PHROG	phrog_21721	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0063665_54	UniRef90	UniRef90_A0A898KA72	NA	NA
UHGV-0063665_54	eggNOG-mapper	1589297.A0A0B5HAH5_9CAUD	magnesium ion binding	NA
UHGV-0063665_56	PHROG	phrog_221	metallo-phosphoesterase	other
UHGV-0063665_56	UniRef90	UniRef90_A0A0F9HQ27	HintN domain-containing protein	NA
UHGV-0063665_56	eggNOG-mapper	608538.HTH_0534	phosphoprotein phosphatase activity	NA
UHGV-0063665_56	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0063665_56	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0063665_56	Structural annotation	PF05203, MF_01420, NF005852, COG1372	NA	NA
UHGV-0063665_59	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0063665_59	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0063665_59	UniRef90	UniRef90_A0A7C1YZA0	Replicative DNA helicase	NA
UHGV-0063665_59	eggNOG-mapper	999541.bgla_1g23430	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0063665_59	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0063665_59	COG	COG0305	Replicative DNA helicase	NA