UHGV-0063697

Genome information

Genome length 40,720 bps

CDS count 60

Completeness 97.89% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063697
vOTU ID	vOTU-073507
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_81892
BioSample	SAMEA2338702
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.64
Jumbo phage	No

Genome content
Genome length	40,720 bps
GC content	38.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.82%
Average CDS length	633.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063697_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0063697_1	PHROG	phrog_291	endolysin	lysis
UHGV-0063697_1	UniRef90	UniRef90_UPI001C395B9C	SH3 domain-containing protein	NA
UHGV-0063697_1	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0063697_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0063697_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0063697_1	Structural annotation	PF01183, PF08460, PF00877, NF040675, COG3757	NA	NA
UHGV-0063697_3	PHROG	phrog_443	holin	lysis
UHGV-0063697_3	UniRef90	UniRef90_UPI001C38BFA7	holin	NA
UHGV-0063697_3	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-0063697_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0063697_4	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0063697_5	PHROG	phrog_774	NA	unknown function
UHGV-0063697_5	UniRef90	UniRef90_A0A8F1B624	NA	NA
UHGV-0063697_5	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0063697_6	PHROG	phrog_134	NA	unknown function
UHGV-0063697_6	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-0063697_6	eggNOG-mapper	742740.HMPREF9474_02255	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0063697_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0063697_6	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0063697_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0063697_7	eggNOG-mapper	33035.JPJF01000043_gene999	NA	NA
UHGV-0063697_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0063697_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0063697_8	UniRef90	UniRef90_UPI001C38EC3D	RNA-directed DNA polymerase	NA
UHGV-0063697_8	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0063697_8	PADLOC	pfam00078	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; acquisition_associated	CRISPR-CAS
UHGV-0063697_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0063697_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0063697_8	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0063697_9	PHROG	phrog_17147	NA	unknown function
UHGV-0063697_9	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0063697_9	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0063697_10	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0063697_10	Structural annotation	PF10651	NA	NA
UHGV-0063697_11	Structural annotation	PF05895	NA	NA
UHGV-0063697_12	PHROG	phrog_9534	head protein	head and packaging
UHGV-0063697_12	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0063697_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0063697_13	UniRef90	UniRef90_UPI001C394BA7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0063697_13	eggNOG-mapper	428127.EUBDOL_01212	NA	NA
UHGV-0063697_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0063697_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0063697_14	PHROG	phrog_36410	NA	unknown function
UHGV-0063697_14	UniRef90	UniRef90_UPI001C38AECF	phage tail family protein	NA
UHGV-0063697_14	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-0063697_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0063697_14	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0063697_15	PHROG	phrog_19074	NA	unknown function
UHGV-0063697_15	UniRef90	UniRef90_A0A3A6DL62	Phage tail tape measure protein	NA
UHGV-0063697_15	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-0063697_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0063697_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0063697_15	COG	COG3883	NA	NA
UHGV-0063697_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0063697_16	PHROG	phrog_706	NA	unknown function
UHGV-0063697_16	UniRef90	UniRef90_UPI000466AAE6	Gp15 family bacteriophage protein	NA
UHGV-0063697_16	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0063697_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0063697_16	Structural annotation	PF06854	NA	NA
UHGV-0063697_17	PHROG	phrog_4450	NA	unknown function
UHGV-0063697_18	PHROG	phrog_3099	NA	unknown function
UHGV-0063697_18	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0063697_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0063697_19	PHROG	phrog_3266	tail completion	connector
UHGV-0063697_19	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0063697_19	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-0063697_19	Structural annotation	PF12691	NA	NA
UHGV-0063697_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0063697_20	UniRef90	UniRef90_UPI0003FD237D	minor capsid protein	NA
UHGV-0063697_20	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0063697_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0063697_20	Structural annotation	PF11114	NA	NA
UHGV-0063697_21	Pfam	PF20536	NA	DUF6751
UHGV-0063697_21	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0063697_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0063697_22	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0063697_23	PHROG	phrog_267	major head protein	head and packaging
UHGV-0063697_23	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0063697_23	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0063697_23	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0063697_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0063697_24	UniRef90	UniRef90_UPI00142FDD09	phage scaffolding protein	NA
UHGV-0063697_24	eggNOG-mapper	642492.Clole_0820	PFAM Phage minor structural	NA
UHGV-0063697_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0063697_24	Structural annotation	PF06810	NA	NA
UHGV-0063697_25	PHROG	phrog_3675	NA	unknown function
UHGV-0063697_25	UniRef90	UniRef90_A0A3N0I0X7	Dihydrolipoyl dehydrogenase	NA
UHGV-0063697_25	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0063697_25	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0063697_25	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0063697_26	PHROG	phrog_27009	NA	unknown function
UHGV-0063697_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0063697_27	UniRef90	UniRef90_UPI0015F51ABE	ADP-ribosyltransferase domain-containing protein	NA
UHGV-0063697_27	eggNOG-mapper	428127.EUBDOL_01227	Phage minor capsid protein 2	NA
UHGV-0063697_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0063697_27	COG	COG2369	NA	NA
UHGV-0063697_27	Structural annotation	PF06152	NA	NA
UHGV-0063697_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0063697_28	UniRef90	UniRef90_A0A3E3EF92	Phage portal protein	NA
UHGV-0063697_28	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0063697_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0063697_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0063697_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0063697_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0063697_29	UniRef90	UniRef90_A8RC01	Phage terminase, large subunit, PBSX family	NA
UHGV-0063697_29	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0063697_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0063697_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0063697_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0063697_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0063697_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0063697_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0063697_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0063697_30	UniRef90	UniRef90_A0A173YJ64	Terminase small subunit	NA
UHGV-0063697_30	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0063697_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0063697_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0063697_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0063697_31	Structural annotation	PF01920, TIGR01636	NA	NA
UHGV-0063697_34	Structural annotation	PF02185, COG5420	NA	NA
UHGV-0063697_39	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0063697_39	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0063697_39	eggNOG-mapper	1196324.A374_15484	Protein conserved in bacteria	NA
UHGV-0063697_39	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0063697_39	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0063697_39	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0063697_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0063697_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0063697_41	UniRef90	UniRef90_A0A380LMA5	Single-stranded DNA-binding protein	NA
UHGV-0063697_41	eggNOG-mapper	518637.EUBIFOR_00985	Single-stranded DNA-binding protein	NA
UHGV-0063697_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0063697_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0063697_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0063697_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0063697_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0063697_43	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0063697_43	UniRef90	UniRef90_A0A350TXF2	Phage_rep_org_N domain-containing protein	NA
UHGV-0063697_43	eggNOG-mapper	626523.GCWU000342_01039	DnaD domain protein	NA
UHGV-0063697_43	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0063697_43	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0063697_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0063697_43	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0063697_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0063697_44	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0063697_44	UniRef90	UniRef90_A0A350TIB2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0063697_44	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0063697_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0063697_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0063697_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0063697_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0063697_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0063697_45	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-0063697_45	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0063697_45	Pfam	PF03837	RecT family	RecT
UHGV-0063697_45	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0063697_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0063697_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0063697_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0063697_46	UniRef90	UniRef90_A0A3N0HYK4	Endonuclease	NA
UHGV-0063697_46	eggNOG-mapper	1121091.AUMP01000032_gene3074	Phage-related protein	NA
UHGV-0063697_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0063697_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0063697_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0063697_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0063697_48	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0063697_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0063697_51	PHROG	phrog_6058	NA	unknown function
UHGV-0063697_51	eggNOG-mapper	658088.HMPREF0987_00666	NA	NA
UHGV-0063697_51	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0063697_53	PHROG	phrog_14657	NA	unknown function
UHGV-0063697_53	UniRef90	UniRef90_A0A374RSX5	NA	NA
UHGV-0063697_53	eggNOG-mapper	518637.EUBIFOR_00253	NA	NA
UHGV-0063697_53	Pfam	PF13780	NA	DUF4176
UHGV-0063697_53	COG	COG4495	NA	NA
UHGV-0063697_53	Structural annotation	PF13780, COG4495	NA	NA
UHGV-0063697_54	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0063697_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0063697_54	UniRef90	UniRef90_UPI001F059420	helix-turn-helix transcriptional regulator	NA
UHGV-0063697_54	eggNOG-mapper	1391647.AVSV01000022_gene2513	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0063697_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0063697_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063697_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0063697_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0063697_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0063697_55	UniRef90	UniRef90_A0A416N3H6	XRE family transcriptional regulator	NA
UHGV-0063697_55	eggNOG-mapper	1163671.JAGI01000002_gene3058	Helix-turn-helix domain protein	NA
UHGV-0063697_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063697_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0063697_55	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0063697_56	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0063697_56	UniRef90	UniRef90_UPI001C38E99D	Abi family protein	NA
UHGV-0063697_56	eggNOG-mapper	537013.CLOSTMETH_00989	Abi-like protein	NA
UHGV-0063697_56	PADLOC	AbiD	AbiD	Abi
UHGV-0063697_56	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0063697_56	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0063697_56	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0063697_57	KOfam	K14059	int; integrase	NA
UHGV-0063697_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0063697_57	UniRef90	UniRef90_UPI001C392616	site-specific integrase	NA
UHGV-0063697_57	eggNOG-mapper	411473.RUMCAL_01506	Belongs to the 'phage' integrase family	NA
UHGV-0063697_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0063697_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0063697_57	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0063697_58	KOfam	K11527	K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]	NA
UHGV-0063697_58	PHROG	phrog_20458	NA	unknown function
UHGV-0063697_58	UniRef90	UniRef90_A0A6N7VGU7	Histidine kinase	NA
UHGV-0063697_58	eggNOG-mapper	518637.EUBIFOR_00992	NA	NA
UHGV-0063697_58	Pfam	PF00990	Diguanylate cyclase, GGDEF domain	GGDEF
UHGV-0063697_58	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0063697_58	NCBIFam	TIGR00254.1	diguanylate cyclase	NA
UHGV-0063697_58	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0063697_59	UniRef90	UniRef90_A0A412I364	NA	NA
UHGV-0063697_59	Pfam	PF13127	NA	DUF3955
UHGV-0063697_60	UniRef90	UniRef90_A0A1I3E1A4	Restriction alleviation protein Lar	NA
UHGV-0063697_60	eggNOG-mapper	518637.EUBIFOR_00994	Restriction alleviation protein Lar	NA
UHGV-0063697_60	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev