UHGV-0063876

Genome information

Genome length 14,744 bps

CDS count 18

Completeness 66.07% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063876
vOTU ID	vOTU-034386
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_73928
BioSample	SAMEA2338719
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.53
Jumbo phage	No

Genome content
Genome length	14,744 bps
GC content	43.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	91.80%
Average CDS length	755.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063876_1	PHROG	phrog_2150	terminase	head and packaging
UHGV-0063876_1	UniRef90	UniRef90_A0A843GDL4	Phage DNA encapsidation protein	NA
UHGV-0063876_1	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0063876_1	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0063876_3	PHROG	phrog_4898	holin	lysis
UHGV-0063876_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0063876_5	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0063876_5	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0063876_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0063876_6	PHROG	phrog_2248	tail protein	tail
UHGV-0063876_6	UniRef90	UniRef90_A0A843GXV1	Caud_tail_N domain-containing protein	NA
UHGV-0063876_6	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0063876_6	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0063876_6	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0063876_6	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0063876_7	PHROG	phrog_2038	upper collar connector	connector
UHGV-0063876_7	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0063876_7	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0063876_7	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0063876_7	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0063876_8	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0063876_8	eggNOG-mapper	1162304.I3PV20_9CAUD	NA	NA
UHGV-0063876_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0063876_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0063876_15	UniRef90	UniRef90_A0A843GX60	DNA-directed DNA polymerase	NA
UHGV-0063876_15	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0063876_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0063876_15	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0063876_18	Structural annotation	PF17548	NA	NA