UHGV-0063906

Genome information

Genome length 33,903 bps

CDS count 50

Completeness 91.18% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0063906
vOTU ID	vOTU-061505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_74925
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.89
Jumbo phage	No

Genome content
Genome length	33,903 bps
GC content	41.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.81%
Average CDS length	625.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0063906_1	UniRef90	UniRef90_A0A1C5W1A8	PBECR3 domain-containing protein	NA
UHGV-0063906_1	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-0063906_1	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0063906_1	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0063906_2	PHROG	phrog_38135	NA	unknown function
UHGV-0063906_2	UniRef90	UniRef90_UPI001EDD72C7	NA	NA
UHGV-0063906_2	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0063906_2	Pfam	PF14020	NA	DUF4236
UHGV-0063906_2	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0063906_2	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0063906_3	PHROG	phrog_87	metallo-protease	other
UHGV-0063906_3	UniRef90	UniRef90_R6WB52	Peptidase_M78 domain-containing protein	NA
UHGV-0063906_3	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0063906_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0063906_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0063906_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0063906_4	UniRef90	UniRef90_UPI001BC112C2	Helix-turn-helix domain-containing protein	NA
UHGV-0063906_4	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0063906_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0063906_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0063906_4	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0063906_5	UniRef90	UniRef90_UPI001BBB62AE	Helix-turn-helix transcriptional regulator	NA
UHGV-0063906_5	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-0063906_5	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0063906_6	eggNOG-mapper	861454.HMPREF9099_00337	NA	NA
UHGV-0063906_7	PHROG	phrog_3240	NA	unknown function
UHGV-0063906_7	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-0063906_10	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0063906_10	PHROG	phrog_1499	NA	unknown function
UHGV-0063906_10	UniRef90	UniRef90_R9JRT0	AAA_23 domain-containing protein	NA
UHGV-0063906_10	eggNOG-mapper	1235792.C808_05391	AAA domain	NA
UHGV-0063906_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0063906_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0063906_10	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0063906_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0063906_11	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-0063906_11	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0063906_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0063906_11	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0063906_12	PHROG	phrog_2698	NA	unknown function
UHGV-0063906_12	UniRef90	UniRef90_D9R8Z5	NA	NA
UHGV-0063906_12	eggNOG-mapper	411462.DORLON_00810	NA	NA
UHGV-0063906_12	Structural annotation	PF05037	NA	NA
UHGV-0063906_13	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0063906_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0063906_13	UniRef90	UniRef90_A0A396PVV7	ATP-dependent helicase	NA
UHGV-0063906_13	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0063906_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0063906_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0063906_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0063906_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0063906_13	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0063906_14	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0063906_14	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0063906_14	UniRef90	UniRef90_A6BET8	Primase C terminal 2 (PriCT-2)	NA
UHGV-0063906_14	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0063906_14	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0063906_14	Pfam	PF13481	AAA domain	AAA_25
UHGV-0063906_14	COG	COG3598	RecA-family ATPase	NA
UHGV-0063906_14	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0063906_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0063906_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0063906_15	UniRef90	UniRef90_A0A3A9F5Y5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0063906_15	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0063906_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0063906_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0063906_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0063906_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0063906_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0063906_17	UniRef90	UniRef90_A0A8E3SGK1	Tyrosine-type recombinase/integrase	NA
UHGV-0063906_17	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-0063906_17	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0063906_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0063906_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0063906_17	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0063906_18	Structural annotation	PF09297, MF_00327	NA	NA
UHGV-0063906_19	eggNOG-mapper	1298920.KI911353_gene2704	NA	NA
UHGV-0063906_21	UniRef90	UniRef90_UPI0018C75AF4	Lar family restriction alleviation protein	NA
UHGV-0063906_21	Structural annotation	NF007260	NA	NA
UHGV-0063906_22	PHROG	phrog_10714	NA	unknown function
UHGV-0063906_22	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0063906_23	PHROG	phrog_2717	NA	unknown function
UHGV-0063906_23	eggNOG-mapper	476272.RUMHYD_02840	NA	NA
UHGV-0063906_23	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0063906_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0063906_24	UniRef90	UniRef90_UPI000C7614A0	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0063906_24	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0063906_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0063906_24	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0063906_25	eggNOG-mapper	864567.HMPREF8571_0576	NA	NA
UHGV-0063906_25	Structural annotation	PF09254, MF_00278, TIGR03800, COG1787, COG0311	NA	NA
UHGV-0063906_26	PHROG	phrog_2412	NA	unknown function
UHGV-0063906_26	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0063906_26	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0063906_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0063906_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0063906_27	UniRef90	UniRef90_UPI0013563028	PBSX family phage terminase large subunit	NA
UHGV-0063906_27	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0063906_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0063906_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0063906_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0063906_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0063906_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0063906_28	UniRef90	UniRef90_UPI000C79119B	phage portal protein	NA
UHGV-0063906_28	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0063906_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0063906_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0063906_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0063906_29	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0063906_29	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0063906_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0063906_29	COG	COG2369	NA	NA
UHGV-0063906_29	Structural annotation	PF06152	NA	NA
UHGV-0063906_30	PHROG	phrog_34144	NA	unknown function
UHGV-0063906_30	eggNOG-mapper	575593.HMPREF0491_02785	NA	NA
UHGV-0063906_30	Structural annotation	PF20111	NA	NA
UHGV-0063906_31	PHROG	phrog_1233	NA	unknown function
UHGV-0063906_31	UniRef90	UniRef90_A0A855HLY8	Peptidase_M78 domain-containing protein	NA
UHGV-0063906_31	eggNOG-mapper	476272.RUMHYD_02850	NA	NA
UHGV-0063906_31	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0063906_31	Structural annotation	PF06114	NA	NA
UHGV-0063906_32	KOfam	K07584	NA	NA
UHGV-0063906_32	PHROG	phrog_4478	peptidase	other
UHGV-0063906_32	UniRef90	UniRef90_UPI000C7705CC	ribosomal-processing cysteine protease Prp	NA
UHGV-0063906_32	eggNOG-mapper	1235792.C808_04675	Cysteine protease Prp	NA
UHGV-0063906_32	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0063906_32	COG	COG2868	NA	NA
UHGV-0063906_32	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0063906_33	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0063906_33	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0063906_34	PHROG	phrog_267	major head protein	head and packaging
UHGV-0063906_34	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0063906_34	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0063906_34	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0063906_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0063906_35	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0063906_35	eggNOG-mapper	997296.PB1_16199	NA	NA
UHGV-0063906_36	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0063906_36	UniRef90	UniRef90_UPI000C77160F	putative minor capsid protein	NA
UHGV-0063906_36	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0063906_36	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0063906_36	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0063906_36	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0063906_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0063906_37	UniRef90	UniRef90_UPI000C7679F4	minor capsid protein	NA
UHGV-0063906_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0063906_37	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0063906_38	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0063906_38	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0063906_38	Structural annotation	PF12691	NA	NA
UHGV-0063906_39	PHROG	phrog_820	major tail protein	tail
UHGV-0063906_39	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0063906_39	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-0063906_39	COG	COG5492	NA	NA
UHGV-0063906_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0063906_40	Structural annotation	PF10666	NA	NA
UHGV-0063906_41	PHROG	phrog_706	NA	unknown function
UHGV-0063906_41	UniRef90	UniRef90_UPI000C78ADA7	Gp15 family bacteriophage protein	NA
UHGV-0063906_41	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-0063906_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0063906_41	Structural annotation	PF06854	NA	NA
UHGV-0063906_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0063906_42	UniRef90	UniRef90_UPI000C7738DA	phage tail tape measure protein	NA
UHGV-0063906_42	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0063906_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0063906_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0063906_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0063906_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0063906_43	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0063906_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0063906_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0063906_44	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0063906_44	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0063906_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0063906_44	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0063906_45	PHROG	phrog_9994	NA	unknown function
UHGV-0063906_45	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-0063906_45	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-0063906_45	Structural annotation	PF20747	NA	NA
UHGV-0063906_47	PHROG	phrog_12931	NA	unknown function
UHGV-0063906_47	eggNOG-mapper	665950.HMPREF1025_02518	NA	NA
UHGV-0063906_48	PHROG	phrog_5056	NA	unknown function
UHGV-0063906_48	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-0063906_48	Structural annotation	NF040910	NA	NA
UHGV-0063906_49	PHROG	phrog_937	hemolysin	other
UHGV-0063906_49	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0063906_50	PHROG	phrog_443	holin	lysis
UHGV-0063906_50	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0063906_50	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0063906_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0063906_50	Structural annotation	PF16945	NA	NA