UHGV-0064077

Genome information

Genome length 28,011 bps

CDS count 36

Completeness 55.96% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064077
vOTU ID	vOTU-025524
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_104536
BioSample	SAMEA2467054
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.06
Jumbo phage	No

Genome content
Genome length	28,011 bps
GC content	59.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.24%
Average CDS length	728.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064077_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0064077_1	PHROG	phrog_19265	NA	unknown function
UHGV-0064077_1	UniRef90	UniRef90_B6XUG6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064077_1	eggNOG-mapper	566552.BIFCAT_00851	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064077_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0064077_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0064077_1	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0064077_2	PHROG	phrog_263	holin	lysis
UHGV-0064077_2	UniRef90	UniRef90_A0A1X3AA97	Holin, SPP1 family	NA
UHGV-0064077_2	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0064077_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0064077_5	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0064077_5	UniRef90	UniRef90_A0A345AR84	Tail fiber protein	NA
UHGV-0064077_5	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-0064077_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0064077_5	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0064077_6	eggNOG-mapper	566552.BIFCAT_00855	outer membrane autotransporter barrel domain protein	NA
UHGV-0064077_6	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0064077_7	PHROG	phrog_1397	NA	unknown function
UHGV-0064077_7	UniRef90	UniRef90_W4N9A6	PRTRC system protein E	NA
UHGV-0064077_7	eggNOG-mapper	1435051.BMOU_0761	NA	NA
UHGV-0064077_8	UniRef90	UniRef90_W4N895	Streptogrisin	NA
UHGV-0064077_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0064077_8	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0064077_9	PHROG	phrog_372	tail protein	tail
UHGV-0064077_9	UniRef90	UniRef90_E0Q7B1	Repeat protein	NA
UHGV-0064077_9	eggNOG-mapper	1435051.BMOU_0763	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0064077_9	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0064077_9	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0064077_9	Structural annotation	PF05895, TIGR04487, NF007507, COG5608, COG5501	NA	NA
UHGV-0064077_10	PHROG	phrog_1775	minor head protein	head and packaging
UHGV-0064077_10	UniRef90	UniRef90_A0A564VLE0	Chromosome partition protein Smc	NA
UHGV-0064077_10	eggNOG-mapper	566552.BIFCAT_00858	nuclear chromosome segregation	NA
UHGV-0064077_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0064077_11	PHROG	phrog_1885	minor tail protein	tail
UHGV-0064077_11	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0064077_11	eggNOG-mapper	566552.BIFCAT_00859	NA	NA
UHGV-0064077_11	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0064077_12	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0064077_12	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0064077_12	eggNOG-mapper	566552.BIFCAT_00860	NA	NA
UHGV-0064077_12	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0064077_13	PHROG	phrog_5577	minor tail protein	tail
UHGV-0064077_13	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0064077_13	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0064077_13	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0064077_14	PHROG	phrog_971	endolysin	lysis
UHGV-0064077_14	UniRef90	UniRef90_A0A1X2ZMM5	NA	NA
UHGV-0064077_14	eggNOG-mapper	1435051.BMOU_0768	phage tail tape measure protein	NA
UHGV-0064077_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0064077_14	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0064077_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0064077_14	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0064077_14	Structural annotation	PF20155, PF09486, TIGR02971, COG3953, COG3941, COG1579	NA	NA
UHGV-0064077_15	eggNOG-mapper	1435051.BMOU_0770	NA	NA
UHGV-0064077_16	PHROG	phrog_5010	tail assembly chaperone	tail
UHGV-0064077_16	eggNOG-mapper	566552.BIFCAT_00864	NA	NA
UHGV-0064077_17	PHROG	phrog_476	major tail protein	tail
UHGV-0064077_17	UniRef90	UniRef90_A0A087DI33	Major tail subunit	NA
UHGV-0064077_17	eggNOG-mapper	1435051.BMOU_0772	NA	NA
UHGV-0064077_17	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0064077_18	eggNOG-mapper	1435051.BMOU_0773	NA	NA
UHGV-0064077_18	Structural annotation	PF16807, NF040576, COG3167	NA	NA
UHGV-0064077_19	eggNOG-mapper	1435051.BMOU_0774	NA	NA
UHGV-0064077_19	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0064077_20	eggNOG-mapper	1435051.BMOU_0775	NA	NA
UHGV-0064077_21	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0064077_21	UniRef90	UniRef90_A0A1X2ZNE2	Mobile element protein	NA
UHGV-0064077_21	eggNOG-mapper	1435051.BMOU_0776	NA	NA
UHGV-0064077_21	Structural annotation	TIGR02215	NA	NA
UHGV-0064077_22	KOfam	K06904	NA	NA
UHGV-0064077_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0064077_22	UniRef90	UniRef90_A0A6A2RR94	HK97 family phage prohead protease	NA
UHGV-0064077_22	eggNOG-mapper	1435051.BMOU_0777	Phage capsid family	NA
UHGV-0064077_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0064077_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0064077_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0064077_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0064077_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0064077_23	UniRef90	UniRef90_A0A1X3AA46	PE-PGRS family protein	NA
UHGV-0064077_23	eggNOG-mapper	1435051.BMOU_0778	Phage portal protein	NA
UHGV-0064077_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0064077_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0064077_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0064077_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0064077_25	UniRef90	UniRef90_W4NAK9	Terminase	NA
UHGV-0064077_25	eggNOG-mapper	1435051.BMOU_0780	Phage Terminase	NA
UHGV-0064077_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0064077_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0064077_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0064077_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0064077_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0064077_26	UniRef90	UniRef90_A0A1X3A9X3	Terminase	NA
UHGV-0064077_26	eggNOG-mapper	158787.BSCA_1010	Phage terminase, small subunit	NA
UHGV-0064077_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0064077_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0064077_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0064077_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0064077_27	eggNOG-mapper	158787.BSCA_1012	NA	NA
UHGV-0064077_30	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0064077_30	UniRef90	UniRef90_A0A1X2ZMQ9	G28 phagic protein	NA
UHGV-0064077_30	eggNOG-mapper	1680.BADO_1215	Transcriptional regulator	NA
UHGV-0064077_30	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0064077_30	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0064077_31	PHROG	phrog_908	NA	unknown function
UHGV-0064077_31	UniRef90	UniRef90_UPI0018B0CF81	helix-turn-helix domain-containing protein	NA
UHGV-0064077_31	eggNOG-mapper	566552.BIFCAT_00879	tRNA 5'-leader removal	NA
UHGV-0064077_31	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0064077_31	Structural annotation	COG0789	NA	NA
UHGV-0064077_32	UniRef90	UniRef90_A0A3D1TL16	Antitoxin	NA
UHGV-0064077_32	eggNOG-mapper	566552.BIFCAT_00880	NA	NA
UHGV-0064077_32	Structural annotation	PF04218	NA	NA
UHGV-0064077_34	PHROG	phrog_3641	NA	unknown function
UHGV-0064077_34	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0064077_35	UniRef90	UniRef90_UPI000E416F79	oligoribonuclease	NA
UHGV-0064077_35	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0064077_35	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0064077_36	eggNOG-mapper	398513.BBNG_00831	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0064077_36	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA