UHGV-0064089

Genome information

Genome length 25,210 bps

CDS count 41

Completeness 67.64% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064089
vOTU ID	vOTU-036244
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_82577
BioSample	SAMEA2338843
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.8
Jumbo phage	No

Genome content
Genome length	25,210 bps
GC content	42.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.93%
Average CDS length	580.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064089_1	PHROG	phrog_18666	NA	unknown function
UHGV-0064089_2	UniRef90	UniRef90_A0A2N5Q1U3	Transcriptional regulator	NA
UHGV-0064089_2	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0064089_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064089_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0064089_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0064089_3	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064089_3	UniRef90	UniRef90_UPI0013DDD289	transcriptional regulator	NA
UHGV-0064089_3	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0064089_3	AcrCatalog	cluster_5564	NA	NA
UHGV-0064089_3	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0064089_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0064089_5	PHROG	phrog_435	endolysin	lysis
UHGV-0064089_5	UniRef90	UniRef90_A0A415SBY0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064089_5	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0064089_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0064089_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064089_5	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0064089_7	PHROG	phrog_10091	holin	lysis
UHGV-0064089_7	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0064089_7	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0064089_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0064089_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0064089_7	COG	COG5546	NA	NA
UHGV-0064089_7	Structural annotation	COG5546	NA	NA
UHGV-0064089_8	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0064089_9	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0064089_9	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0064089_9	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0064089_9	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0064089_10	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0064089_10	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0064089_10	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0064089_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0064089_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0064089_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0064089_10	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0064089_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0064089_11	UniRef90	UniRef90_UPI001C8EB1BF	tape measure protein	NA
UHGV-0064089_11	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0064089_11	COG	COG1511	NA	NA
UHGV-0064089_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0064089_12	eggNOG-mapper	1235792.C808_05376	NA	NA
UHGV-0064089_12	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0064089_13	PHROG	phrog_706	NA	unknown function
UHGV-0064089_13	UniRef90	UniRef90_UPI00129D4CEC	Gp15 family bacteriophage protein	NA
UHGV-0064089_13	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0064089_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0064089_13	Structural annotation	PF06854	NA	NA
UHGV-0064089_14	PHROG	phrog_4450	NA	unknown function
UHGV-0064089_14	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0064089_14	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0064089_14	Pfam	PF20378	NA	DUF6673
UHGV-0064089_14	Structural annotation	PF20378	NA	NA
UHGV-0064089_15	PHROG	phrog_3099	NA	unknown function
UHGV-0064089_15	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0064089_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0064089_16	PHROG	phrog_3266	tail completion	connector
UHGV-0064089_16	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0064089_16	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0064089_16	Structural annotation	PF12691	NA	NA
UHGV-0064089_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0064089_17	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0064089_17	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0064089_17	Structural annotation	PF11114	NA	NA
UHGV-0064089_18	PHROG	phrog_3366	NA	unknown function
UHGV-0064089_18	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0064089_18	Pfam	PF20536	NA	DUF6751
UHGV-0064089_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0064089_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0064089_19	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0064089_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0064089_20	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0064089_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0064089_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0064089_21	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0064089_21	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0064089_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0064089_21	Structural annotation	PF06810	NA	NA
UHGV-0064089_22	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0064089_22	Structural annotation	NF040910	NA	NA
UHGV-0064089_24	UniRef90	UniRef90_UPI001E2D7315	phage baseplate upper protein	NA
UHGV-0064089_24	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0064089_25	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0064089_25	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0064089_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0064089_26	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0064089_26	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0064089_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0064089_26	COG	COG2369	NA	NA
UHGV-0064089_26	Structural annotation	PF06152	NA	NA
UHGV-0064089_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0064089_27	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0064089_27	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0064089_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0064089_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0064089_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0064089_28	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0064089_28	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0064089_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0064089_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0064089_28	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0064089_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0064089_29	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0064089_29	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0064089_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0064089_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0064089_29	Structural annotation	PF07141	NA	NA
UHGV-0064089_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0064089_30	Structural annotation	PF04545	NA	NA
UHGV-0064089_31	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0064089_33	PHROG	phrog_15198	NA	unknown function
UHGV-0064089_33	UniRef90	UniRef90_UPI001D04EA1D	NA	NA
UHGV-0064089_33	Pfam	PF04448	NA	DUF551
UHGV-0064089_33	Structural annotation	PF04448	NA	NA
UHGV-0064089_34	Structural annotation	PF02895	NA	NA
UHGV-0064089_37	PHROG	phrog_8684	NA	unknown function
UHGV-0064089_37	UniRef90	UniRef90_F7K050	YopX domain-containing protein	NA
UHGV-0064089_37	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0064089_37	Pfam	PF09643	YopX protein	YopX
UHGV-0064089_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0064089_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0064089_39	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0064089_39	UniRef90	UniRef90_UPI000467054D	Lar family restriction alleviation protein	NA
UHGV-0064089_39	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0064089_39	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0064089_39	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0064089_39	Structural annotation	PF14354, TIGR03655, COG3811	NA	NA
UHGV-0064089_40	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064089_40	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-0064089_40	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0064089_40	Structural annotation	PF13392	NA	NA
UHGV-0064089_41	eggNOG-mapper	97139.C824_00033	NA	NA