UHGV-0064105

Genome information

Genome length 61,410 bps

CDS count 98

Completeness 98.48% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064105
vOTU ID	vOTU-007607
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_74349
BioSample	SAMEA2338848
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.27
Jumbo phage	No

Genome content
Genome length	61,410 bps
GC content	57.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	86.93%
Average CDS length	548.42 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064105_1	UniRef90	UniRef90_A0A229W0U2	DoxX	NA
UHGV-0064105_1	eggNOG-mapper	1341695.BBOMB_1024	NA	NA
UHGV-0064105_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0064105_2	PHROG	phrog_291	endolysin	lysis
UHGV-0064105_2	UniRef90	UniRef90_I3AVV2	Glycosyl hydrolase family 25	NA
UHGV-0064105_2	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0064105_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0064105_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0064105_2	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0064105_3	UniRef90	UniRef90_A0A2K9B418	Glycosyl hydrolases family 25	NA
UHGV-0064105_3	Structural annotation	PF00980, TIGR03711	NA	NA
UHGV-0064105_4	PHROG	phrog_35081	NA	unknown function
UHGV-0064105_4	eggNOG-mapper	1437608.BBIA_0308	NA	NA
UHGV-0064105_4	Structural annotation	PF15432, TIGR03711	NA	NA
UHGV-0064105_5	PHROG	phrog_35108	NA	unknown function
UHGV-0064105_5	eggNOG-mapper	1437610.BREU_1368	NA	NA
UHGV-0064105_5	Structural annotation	PF15432, TIGR03711	NA	NA
UHGV-0064105_6	UniRef90	UniRef90_UPI00098663E2	Ig-like domain-containing protein	NA
UHGV-0064105_6	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0064105_6	Structural annotation	PF02368, NF038186, COG5492	NA	NA
UHGV-0064105_7	PHROG	phrog_28754	NA	unknown function
UHGV-0064105_7	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0064105_7	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0064105_8	PHROG	phrog_1397	NA	unknown function
UHGV-0064105_8	UniRef90	UniRef90_UPI001EDD6A2B	PRTRC system protein E	NA
UHGV-0064105_8	eggNOG-mapper	1435051.BMOU_0761	NA	NA
UHGV-0064105_9	eggNOG-mapper	1437610.BREU_1372	NA	NA
UHGV-0064105_10	PHROG	phrog_1887	tail protein	tail
UHGV-0064105_10	eggNOG-mapper	1688.BCUN_0259	NA	NA
UHGV-0064105_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0064105_11	UniRef90	UniRef90_A0A1D7UNR9	Fibronectin type-III domain-containing protein	NA
UHGV-0064105_11	eggNOG-mapper	1437610.BREU_1374	Fibronectin type 3 domain	NA
UHGV-0064105_11	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0064105_11	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-0064105_12	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0064105_12	UniRef90	UniRef90_A0A4R0V4T5	Tail measure	NA
UHGV-0064105_12	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0064105_12	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0064105_14	PHROG	phrog_36579	NA	unknown function
UHGV-0064105_15	PHROG	phrog_117	major tail protein	tail
UHGV-0064105_15	UniRef90	UniRef90_A0A1D7UNT0	Phage coat protein	NA
UHGV-0064105_15	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-0064105_15	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0064105_16	Structural annotation	PF12691	NA	NA
UHGV-0064105_17	PHROG	phrog_32608	NA	unknown function
UHGV-0064105_17	Structural annotation	PF17395	NA	NA
UHGV-0064105_18	PHROG	phrog_25853	NA	unknown function
UHGV-0064105_18	UniRef90	UniRef90_A0A6I1BRP7	Thiamine biosynthesis protein ThiS	NA
UHGV-0064105_18	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-0064105_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0064105_19	PHROG	phrog_36776	NA	unknown function
UHGV-0064105_19	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0064105_20	PHROG	phrog_29	major head protein	head and packaging
UHGV-0064105_20	UniRef90	UniRef90_A0A6L9SSK3	Major capsid protein E	NA
UHGV-0064105_20	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0064105_20	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0064105_20	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0064105_21	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0064105_21	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0064105_21	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0064105_21	Structural annotation	PF02924	NA	NA
UHGV-0064105_23	PHROG	phrog_36668	NA	unknown function
UHGV-0064105_23	UniRef90	UniRef90_A0A1D7UNR5	NA	NA
UHGV-0064105_23	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0064105_23	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0064105_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-0064105_24	UniRef90	UniRef90_A0A7Y0EP85	Phage portal protein gp6	NA
UHGV-0064105_24	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0064105_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0064105_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0064105_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0064105_25	UniRef90	UniRef90_A0A1D7UNS3	Phage terminase	NA
UHGV-0064105_25	eggNOG-mapper	35760.BCHO_0844	Terminase	NA
UHGV-0064105_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0064105_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0064105_26	PHROG	phrog_226	minor tail protein	tail
UHGV-0064105_26	eggNOG-mapper	566461.SSFG_01019	NA	NA
UHGV-0064105_27	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064105_27	UniRef90	UniRef90_A0A087B681	Putative site-specific recombinase	NA
UHGV-0064105_27	eggNOG-mapper	1349820.M707_02680	HNH endonuclease	NA
UHGV-0064105_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0064105_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0064105_28	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064105_28	UniRef90	UniRef90_A0A3E4S3S1	HNH endonuclease	NA
UHGV-0064105_28	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-0064105_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0064105_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0064105_30	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0064105_30	UniRef90	UniRef90_A0A7L9UK22	Helix-turn-helix transcriptional regulator	NA
UHGV-0064105_30	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-0064105_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064105_30	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0064105_31	eggNOG-mapper	78344.BIGA_1553	NA	NA
UHGV-0064105_31	AcrCatalog	cluster_30544	NA	NA
UHGV-0064105_32	UniRef90	UniRef90_UPI001BDDB304	toxin-antitoxin system antitoxin subunit	NA
UHGV-0064105_32	eggNOG-mapper	1437610.BREU_1783	NA	NA
UHGV-0064105_33	PHROG	phrog_19904	NA	unknown function
UHGV-0064105_42	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0064105_42	PHROG	phrog_2737	NA	unknown function
UHGV-0064105_42	UniRef90	UniRef90_A0A5M9ZK91	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-0064105_42	eggNOG-mapper	762211.BSTEL_0269	RelB antitoxin	NA
UHGV-0064105_42	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0064105_42	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0064105_42	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0064105_43	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0064105_43	UniRef90	UniRef90_A0A0L7B5Y1	Growth inhibitor PemK	NA
UHGV-0064105_43	eggNOG-mapper	762211.BSTEL_0268	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0064105_43	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0064105_43	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0064105_45	KOfam	K07391	comM; magnesium chelatase family protein	NA
UHGV-0064105_45	UniRef90	UniRef90_A0A7X9GFG0	ATP-binding protein (Fragment)	NA
UHGV-0064105_45	eggNOG-mapper	1437606.BBOH_0347	Magnesium chelatase, subunit ChlI C-terminal	NA
UHGV-0064105_45	Pfam	PF13541	Subunit ChlI of Mg-chelatase	ChlI
UHGV-0064105_45	COG	COG0606	Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family	NA
UHGV-0064105_49	PHROG	phrog_17662	NA	unknown function
UHGV-0064105_49	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0064105_49	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0064105_49	Structural annotation	MF_03128, TIGR02495, COG2896	NA	NA
UHGV-0064105_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0064105_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0064105_52	UniRef90	UniRef90_A0A1D7UNM8	Prophage antirepressor	NA
UHGV-0064105_52	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0064105_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0064105_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0064105_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0064105_52	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0064105_53	PHROG	phrog_908	NA	unknown function
UHGV-0064105_53	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-0064105_54	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-0064105_55	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0064105_55	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0064105_55	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0064105_58	UniRef90	UniRef90_A0A6I1BTC3	Helix-turn-helix domain-containing protein	NA
UHGV-0064105_58	Structural annotation	PF13384, NF041395	NA	NA
UHGV-0064105_60	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0064105_61	Structural annotation	NF007260	NA	NA
UHGV-0064105_62	PHROG	phrog_2089	NA	unknown function
UHGV-0064105_62	UniRef90	UniRef90_A0A1V8RER5	NA	NA
UHGV-0064105_65	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0064105_65	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0064105_65	eggNOG-mapper	1437603.BMON_0158	NA	NA
UHGV-0064105_65	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0064105_71	PHROG	phrog_774	NA	unknown function
UHGV-0064105_71	UniRef90	UniRef90_W6F043	NA	NA
UHGV-0064105_71	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0064105_71	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0064105_72	PHROG	phrog_3972	NA	unknown function
UHGV-0064105_72	UniRef90	UniRef90_W6EWQ1	NA	NA
UHGV-0064105_72	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-0064105_72	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-0064105_74	UniRef90	UniRef90_UPI000E44C377	NA	NA
UHGV-0064105_74	eggNOG-mapper	35760.BCHO_0870	NA	NA
UHGV-0064105_75	Structural annotation	TIGR00739, COG1862	NA	NA
UHGV-0064105_78	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064105_78	UniRef90	UniRef90_A0A6I1CSY8	C2H2-type domain-containing protein	NA
UHGV-0064105_78	eggNOG-mapper	1437603.BMON_1161	HNH endonuclease	NA
UHGV-0064105_78	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0064105_78	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0064105_79	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0064105_80	Structural annotation	TIGR00739	NA	NA
UHGV-0064105_81	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0064105_81	UniRef90	UniRef90_A0A2N0T1Z7	Recombination protein-phage associated	NA
UHGV-0064105_81	eggNOG-mapper	363253.LI0182	ERF superfamily	NA
UHGV-0064105_81	Pfam	PF04404	ERF superfamily	ERF
UHGV-0064105_81	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0064105_82	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0064105_82	UniRef90	UniRef90_V6XW23	NA	NA
UHGV-0064105_82	eggNOG-mapper	1687.BCOR_0988	NA	NA
UHGV-0064105_82	Pfam	PF12684	NA	DUF3799
UHGV-0064105_82	Structural annotation	PF12684, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-0064105_83	UniRef90	UniRef90_UPI000F4D02D5	DivIVA domain-containing protein	NA
UHGV-0064105_83	eggNOG-mapper	1147128.BAST_0508	DivIVA protein	NA
UHGV-0064105_83	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0064105_83	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0064105_83	Structural annotation	MF_02011	NA	NA
UHGV-0064105_85	eggNOG-mapper	1389489.O159_16550	P22_AR N-terminal domain	NA
UHGV-0064105_85	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0064105_93	UniRef90	UniRef90_A0A1D7UNJ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0064105_94	UniRef90	UniRef90_A0A318MGY9	HTH cro/C1-type domain-containing protein	NA
UHGV-0064105_95	eggNOG-mapper	1147128.BAST_1524	NA	NA
UHGV-0064105_96	eggNOG-mapper	1137268.AZXF01000014_gene78	NA	NA
UHGV-0064105_97	PHROG	phrog_1281	NA	unknown function
UHGV-0064105_97	UniRef90	UniRef90_A0A0L7B6C0	NA	NA
UHGV-0064105_97	eggNOG-mapper	1437603.BMON_0174	NA	NA
UHGV-0064105_97	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0064105_97	COG	COG3600	NA	NA
UHGV-0064105_97	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0064105_98	KOfam	K14059	int; integrase	NA
UHGV-0064105_98	PHROG	phrog_1	integrase	integration and excision
UHGV-0064105_98	UniRef90	UniRef90_A0A1D7UNI8	Putative phage integrase family protein	NA
UHGV-0064105_98	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0064105_98	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0064105_98	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0064105_98	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA