UHGV-0064116

Genome information

Genome length 42,933 bps

CDS count 66

Completeness 72.69% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064116
vOTU ID	vOTU-025943
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_70126
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.3
Jumbo phage	No

Genome content
Genome length	42,933 bps
GC content	37.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.62%
Average CDS length	598.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064116_3	PHROG	phrog_9804	NA	unknown function
UHGV-0064116_3	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0064116_3	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0064116_3	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0064116_3	Structural annotation	PF11417	NA	NA
UHGV-0064116_4	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0064116_4	eggNOG-mapper	565653.EGBG_01946	DnaD domain protein	NA
UHGV-0064116_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0064116_4	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0064116_8	Structural annotation	PF05641	NA	NA
UHGV-0064116_9	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0064116_10	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0064116_11	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0064116_11	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0064116_11	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0064116_11	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0064116_11	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0064116_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0064116_11	COG	COG0863	DNA modification methylase	NA
UHGV-0064116_11	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0064116_12	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064116_12	UniRef90	UniRef90_UPI0004B1D72B	NUMOD4 domain-containing protein	NA
UHGV-0064116_12	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0064116_12	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0064116_12	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0064116_12	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0064116_12	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0064116_14	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0064116_14	UniRef90	UniRef90_A0A413RZZ9	Class I SAM-dependent methyltransferase	NA
UHGV-0064116_14	eggNOG-mapper	457405.FSDG_01549	methyltransferase	NA
UHGV-0064116_14	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0064116_14	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0064116_14	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0064116_14	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0064116_15	PHROG	phrog_19106	NA	unknown function
UHGV-0064116_15	UniRef90	UniRef90_A0A417B0D0	GIY-YIG nuclease family protein	NA
UHGV-0064116_15	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0064116_15	Structural annotation	TIGR01453	NA	NA
UHGV-0064116_17	PHROG	phrog_21026	NA	unknown function
UHGV-0064116_18	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0064116_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0064116_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0064116_19	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-0064116_19	eggNOG-mapper	553973.CLOHYLEM_07405	Single-stranded DNA-binding protein	NA
UHGV-0064116_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0064116_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0064116_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0064116_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0064116_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0064116_20	PHROG	phrog_9348	NA	unknown function
UHGV-0064116_21	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0064116_21	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0064116_21	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0064116_21	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0064116_21	dbAPIS	APIS058	NA	NA
UHGV-0064116_21	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0064116_21	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0064116_23	PHROG	phrog_13999	NA	unknown function
UHGV-0064116_24	PHROG	phrog_25456	NA	unknown function
UHGV-0064116_25	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0064116_25	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0064116_25	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0064116_25	Pfam	PF03837	RecT family	RecT
UHGV-0064116_25	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0064116_26	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0064116_26	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0064116_26	UniRef90	UniRef90_A0A4Q5C974	Reverse transcriptase domain-containing protein	NA
UHGV-0064116_26	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0064116_26	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0064116_26	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0064116_26	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0064116_26	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0064116_27	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0064116_27	UniRef90	UniRef90_A0A4Q5C8K1	Four helix bundle protein	NA
UHGV-0064116_27	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0064116_27	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0064116_27	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0064116_28	PHROG	phrog_9958	NA	unknown function
UHGV-0064116_28	UniRef90	UniRef90_A0A4Q5C6P1	NA	NA
UHGV-0064116_28	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0064116_28	Pfam	PF19789	NA	DUF6273
UHGV-0064116_28	Structural annotation	PF19789	NA	NA
UHGV-0064116_29	PHROG	phrog_9958	NA	unknown function
UHGV-0064116_29	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0064116_29	Structural annotation	PF19789	NA	NA
UHGV-0064116_30	PHROG	phrog_2164	NA	unknown function
UHGV-0064116_30	UniRef90	UniRef90_B9BHQ7	Gp4	NA
UHGV-0064116_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0064116_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064116_31	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0064116_31	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0064116_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-0064116_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0064116_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0064116_34	PHROG	phrog_4292	NA	unknown function
UHGV-0064116_34	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-0064116_35	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0064116_35	UniRef90	UniRef90_UPI001BED9A05	ORF6C domain-containing protein	NA
UHGV-0064116_35	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0064116_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0064116_35	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0064116_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0064116_35	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0064116_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0064116_38	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0064116_38	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0064116_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064116_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0064116_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0064116_39	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0064116_39	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0064116_39	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0064116_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064116_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0064116_39	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0064116_40	PHROG	phrog_32721	NA	unknown function
UHGV-0064116_40	UniRef90	UniRef90_X8HUR1	Putative lipoprotein	NA
UHGV-0064116_40	eggNOG-mapper	1391646.AVSU01000065_gene2762	NA	NA
UHGV-0064116_40	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0064116_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0064116_41	PHROG	phrog_435	endolysin	lysis
UHGV-0064116_41	UniRef90	UniRef90_UPI000D659E9B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064116_41	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-0064116_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0064116_41	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0064116_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064116_41	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0064116_42	PHROG	phrog_6616	tail protein	tail
UHGV-0064116_42	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-0064116_42	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0064116_42	COG	COG4926	Phage-related protein	NA
UHGV-0064116_43	PHROG	phrog_1194	NA	unknown function
UHGV-0064116_43	eggNOG-mapper	1122918.KB907248_gene4488	NA	NA
UHGV-0064116_43	Pfam	PF20458	NA	DUF6711
UHGV-0064116_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0064116_44	PHROG	phrog_28918	NA	unknown function
UHGV-0064116_44	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0064116_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0064116_45	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064116_45	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0064116_45	eggNOG-mapper	1380384.JADN01000003_gene632	Intron encoded nuclease repeat motif	NA
UHGV-0064116_45	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0064116_45	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0064116_45	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0064116_45	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0064116_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0064116_46	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0064116_46	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0064116_46	COG	COG1511	NA	NA
UHGV-0064116_48	PHROG	phrog_36112	NA	unknown function
UHGV-0064116_48	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0064116_48	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0064116_48	Structural annotation	PF16478	NA	NA
UHGV-0064116_49	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0064116_49	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0064116_50	Structural annotation	PF05657	NA	NA
UHGV-0064116_51	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0064116_51	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0064116_51	AcrCatalog	cluster_24841	NA	NA
UHGV-0064116_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0064116_53	PHROG	phrog_1129	holin	lysis
UHGV-0064116_53	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0064116_53	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0064116_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0064116_53	Structural annotation	PF06946	NA	NA
UHGV-0064116_54	PHROG	phrog_4105	NA	unknown function
UHGV-0064116_54	eggNOG-mapper	1256908.HMPREF0373_00464	NA	NA
UHGV-0064116_55	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0064116_56	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0064116_56	Structural annotation	PF21169	NA	NA
UHGV-0064116_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0064116_57	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0064116_57	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0064116_57	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0064116_57	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0064116_58	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0064116_59	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0064116_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-0064116_60	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0064116_60	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0064116_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0064116_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0064116_61	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0064116_61	UniRef90	UniRef90_W8TM41	RNA polymerase, sigma-24 subunit, ECF subfamily	NA
UHGV-0064116_61	eggNOG-mapper	1286171.EAL2_c19860	sigma factor activity	NA
UHGV-0064116_61	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0064116_61	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0064116_62	PHROG	phrog_9529	NA	unknown function
UHGV-0064116_62	UniRef90	UniRef90_A0A3E2VLR1	NA	NA
UHGV-0064116_62	eggNOG-mapper	1122143.AUEG01000001_gene572	NA	NA
UHGV-0064116_62	Pfam	PF04480	NA	DUF559
UHGV-0064116_62	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0064116_62	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-0064116_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0064116_63	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0064116_63	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0064116_63	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0064116_63	COG	COG5410	NA	NA
UHGV-0064116_63	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0064116_65	PHROG	phrog_10678	NA	unknown function
UHGV-0064116_66	Structural annotation	PF05225, COG2886	NA	NA