UHGV-0064134

Genome information

vOTU vOTU-020822

Genome length 54,559 bps

CDS count 85

Completeness 88.19% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064134
vOTU ID	vOTU-020822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_75945
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.78
Jumbo phage	No

Genome content
Genome length	54,559 bps
GC content	41.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	88.60%
Average CDS length	572.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064134_1	PHROG	phrog_1863	NA	unknown function
UHGV-0064134_1	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0064134_2	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0064134_2	UniRef90	UniRef90_UPI001898773C	tail fiber domain-containing protein	NA
UHGV-0064134_2	eggNOG-mapper	1232453.BAIF02000059_gene1614	NA	NA
UHGV-0064134_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0064134_4	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0064134_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0064134_4	UniRef90	UniRef90_UPI00189794A7	tyrosine-type recombinase/integrase	NA
UHGV-0064134_4	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0064134_4	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0064134_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0064134_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0064134_4	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0064134_6	Structural annotation	PF07880	NA	NA
UHGV-0064134_7	PHROG	phrog_6616	tail protein	tail
UHGV-0064134_7	UniRef90	UniRef90_UPI001C10B551	tail fiber domain-containing protein	NA
UHGV-0064134_7	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0064134_7	COG	COG4926	Phage-related protein	NA
UHGV-0064134_7	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0064134_8	PHROG	phrog_1401	NA	unknown function
UHGV-0064134_8	UniRef90	UniRef90_UPI001D00FC65	NA	NA
UHGV-0064134_8	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0064134_8	Structural annotation	PF07761	NA	NA
UHGV-0064134_9	PHROG	phrog_2566	NA	unknown function
UHGV-0064134_9	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0064134_10	PHROG	phrog_1194	NA	unknown function
UHGV-0064134_10	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0064134_10	Pfam	PF20458	NA	DUF6711
UHGV-0064134_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0064134_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0064134_11	UniRef90	UniRef90_A0A396PS29	SLT domain-containing protein	NA
UHGV-0064134_11	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0064134_11	COG	COG5412	Phage-related protein	NA
UHGV-0064134_11	Structural annotation	NF012014	NA	NA
UHGV-0064134_13	Structural annotation	PF16478	NA	NA
UHGV-0064134_14	PHROG	phrog_158	major tail protein	tail
UHGV-0064134_14	UniRef90	UniRef90_UPI000E415907	phage tail protein	NA
UHGV-0064134_14	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0064134_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0064134_15	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0064134_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0064134_16	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0064134_16	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0064134_16	AcrCatalog	cluster_24841	NA	NA
UHGV-0064134_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0064134_18	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0064134_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0064134_19	UniRef90	UniRef90_A0A3E5EH69	ArsR family transcriptional regulator	NA
UHGV-0064134_19	Structural annotation	PF01978, MF_01909, NF033788, COG1675	NA	NA
UHGV-0064134_20	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0064134_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0064134_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0064134_21	UniRef90	UniRef90_UPI00189BAC48	major capsid protein	NA
UHGV-0064134_21	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0064134_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0064134_21	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0064134_21	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0064134_22	PHROG	phrog_909	major head protein	head and packaging
UHGV-0064134_22	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0064134_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0064134_23	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-0064134_23	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0064134_23	Pfam	PF14265	NA	DUF4355
UHGV-0064134_23	Structural annotation	PF14265	NA	NA
UHGV-0064134_24	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0064134_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0064134_24	COG	COG2369	NA	NA
UHGV-0064134_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0064134_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0064134_25	UniRef90	UniRef90_UPI00189968BF	phage portal protein	NA
UHGV-0064134_25	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0064134_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0064134_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0064134_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0064134_26	UniRef90	UniRef90_UPI000E3FDDBA	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0064134_26	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0064134_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0064134_26	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0064134_27	PHROG	phrog_7024	NA	unknown function
UHGV-0064134_27	eggNOG-mapper	1408311.JNJM01000040_gene947	NA	NA
UHGV-0064134_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0064134_28	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0064134_28	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0064134_28	COG	COG5410	NA	NA
UHGV-0064134_28	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0064134_37	eggNOG-mapper	645991.Sgly_0337	NA	NA
UHGV-0064134_40	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0064134_40	Structural annotation	PF16677	NA	NA
UHGV-0064134_41	PHROG	phrog_29304	NA	unknown function
UHGV-0064134_41	UniRef90	UniRef90_UPI000E40B881	type II toxin-antitoxin system MqsA family antitoxin	NA
UHGV-0064134_41	eggNOG-mapper	97139.C824_00062	NA	NA
UHGV-0064134_41	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0064134_41	Structural annotation	PF14122, TIGR03829	NA	NA
UHGV-0064134_42	UniRef90	UniRef90_UPI000E40015B	NA	NA
UHGV-0064134_42	eggNOG-mapper	411470.RUMGNA_00076	COG NOG21680 non supervised orthologous group	NA
UHGV-0064134_42	Pfam	PF14076	NA	DUF4258
UHGV-0064134_42	Structural annotation	PF14076, TIGR02683, COG2929	NA	NA
UHGV-0064134_43	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0064134_43	UniRef90	UniRef90_UPI001D08D759	helix-turn-helix transcriptional regulator	NA
UHGV-0064134_43	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0064134_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0064134_43	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0064134_43	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0064134_44	PHROG	phrog_27491	NA	unknown function
UHGV-0064134_48	UniRef90	UniRef90_A0A416CBD5	ShKT domain-containing protein	NA
UHGV-0064134_48	eggNOG-mapper	1121115.AXVN01000111_gene1179	NA	NA
UHGV-0064134_51	UniRef90	UniRef90_G2T4F3	HEPN_Apea domain-containing protein	NA
UHGV-0064134_51	eggNOG-mapper	585394.RHOM_13260	NA	NA
UHGV-0064134_52	PHROG	phrog_15198	NA	unknown function
UHGV-0064134_52	UniRef90	UniRef90_F3AXT6	NA	NA
UHGV-0064134_52	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0064134_53	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0064134_53	UniRef90	UniRef90_A0A894KBW2	LexA_DNA_bind domain-containing protein	NA
UHGV-0064134_53	eggNOG-mapper	665950.HMPREF1025_02544	NA	NA
UHGV-0064134_54	eggNOG-mapper	411463.EUBVEN_01754	NA	NA
UHGV-0064134_55	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0064134_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0064134_56	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0064134_56	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-0064134_56	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0064134_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0064134_56	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0064134_58	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0064134_58	UniRef90	UniRef90_A0A1E3UAI9	MazG domain-containing protein	NA
UHGV-0064134_58	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0064134_58	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0064134_59	PHROG	phrog_4601	NA	unknown function
UHGV-0064134_59	Structural annotation	PF17888	NA	NA
UHGV-0064134_62	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0064134_62	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0064134_62	UniRef90	UniRef90_UPI001897F4FC	AAA family ATPase	NA
UHGV-0064134_62	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0064134_62	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0064134_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0064134_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0064134_62	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0064134_63	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0064134_63	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-0064134_63	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-0064134_63	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0064134_63	Structural annotation	PF08679, MF_01911, NF033788, COG1733	NA	NA
UHGV-0064134_64	PHROG	phrog_19106	NA	unknown function
UHGV-0064134_64	UniRef90	UniRef90_UPI000E404AB1	GIY-YIG nuclease family protein	NA
UHGV-0064134_64	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0064134_64	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0064134_64	Structural annotation	TIGR01453	NA	NA
UHGV-0064134_65	eggNOG-mapper	1298920.KI911353_gene2716	NA	NA
UHGV-0064134_65	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0064134_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0064134_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0064134_66	UniRef90	UniRef90_UPI000E3FC2A8	single-stranded DNA-binding protein	NA
UHGV-0064134_66	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0064134_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0064134_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0064134_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0064134_66	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0064134_66	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0064134_67	PHROG	phrog_1029	NA	unknown function
UHGV-0064134_67	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0064134_67	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-0064134_67	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0064134_68	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0064134_68	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0064134_69	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0064134_69	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0064134_69	UniRef90	UniRef90_UPI001897489E	MBL fold metallo-hydrolase	NA
UHGV-0064134_69	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0064134_69	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0064134_69	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0064134_69	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0064134_70	PHROG	phrog_25456	NA	unknown function
UHGV-0064134_71	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0064134_71	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0064134_71	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0064134_71	Pfam	PF03837	RecT family	RecT
UHGV-0064134_71	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0064134_72	Structural annotation	PF19157	NA	NA
UHGV-0064134_74	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0064134_74	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064134_74	UniRef90	UniRef90_UPI000E406F76	AAA family ATPase	NA
UHGV-0064134_74	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0064134_74	Pfam	PF13476	AAA domain	AAA_23
UHGV-0064134_74	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0064134_74	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0064134_75	PHROG	phrog_4292	NA	unknown function
UHGV-0064134_77	PHROG	phrog_6058	NA	unknown function
UHGV-0064134_77	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0064134_77	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0064134_78	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0064134_78	UniRef90	UniRef90_R6ELC1	NA	NA
UHGV-0064134_78	eggNOG-mapper	626523.GCWU000342_01044	NA	NA
UHGV-0064134_78	Pfam	PF13643	NA	DUF4145
UHGV-0064134_78	Structural annotation	COG2250	NA	NA
UHGV-0064134_79	PHROG	phrog_14088	NA	unknown function
UHGV-0064134_79	UniRef90	UniRef90_UPI001D07CB3C	carboxypeptidase	NA
UHGV-0064134_79	eggNOG-mapper	1232453.BAIF02000057_gene1127	NA	NA
UHGV-0064134_80	UniRef90	UniRef90_A0A6N2UEL6	HTH cro/C1-type domain-containing protein	NA
UHGV-0064134_80	eggNOG-mapper	717606.PaecuDRAFT_3095	NA	NA
UHGV-0064134_80	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064134_80	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0064134_81	UniRef90	UniRef90_UPI0018997E4E	XRE family transcriptional regulator	NA
UHGV-0064134_81	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0064134_81	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0064134_81	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0064134_82	PHROG	phrog_87	metallo-protease	other
UHGV-0064134_82	UniRef90	UniRef90_UPI00189959C3	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0064134_82	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0064134_82	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0064134_82	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0064134_82	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0064134_83	PHROG	phrog_9700	NA	unknown function
UHGV-0064134_83	eggNOG-mapper	1232453.BAIF02000057_gene1121	NA	NA
UHGV-0064134_85	KOfam	K14059	int; integrase	NA
UHGV-0064134_85	PHROG	phrog_1	integrase	integration and excision
UHGV-0064134_85	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0064134_85	eggNOG-mapper	665950.HMPREF1025_01927	Phage integrase family	NA
UHGV-0064134_85	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0064134_85	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0064134_85	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA