UHGV-0064220

Genome information

Genome length 53,267 bps

CDS count 54

Completeness 67.61% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064220
vOTU ID	vOTU-016826
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_75025
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.61% (medium-quality)
CheckV contamination	27.91%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.72
Jumbo phage	No

Genome content
Genome length	53,267 bps
GC content	39.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	87.96%
Average CDS length	869.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064220_1	KOfam	K03672	trxC; thioredoxin 2 [EC:1.8.1.8]	NA
UHGV-0064220_1	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-0064220_1	UniRef90	UniRef90_R6XVN0	Thioredoxin	NA
UHGV-0064220_1	eggNOG-mapper	1203611.KB894541_gene1346	Belongs to the thioredoxin family	NA
UHGV-0064220_1	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0064220_1	NCBIFam	TIGR01068.1	thioredoxin	NA
UHGV-0064220_1	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0064220_2	UniRef90	UniRef90_A0A1Y3QX90	SinI family restriction endonuclease	NA
UHGV-0064220_2	eggNOG-mapper	1203611.KB894544_gene2047	SinI restriction endonuclease	NA
UHGV-0064220_2	PADLOC	REase_II_00083	Type II restriction enzyme	RM
UHGV-0064220_2	Pfam	PF09570	SinI restriction endonuclease	RE_SinI
UHGV-0064220_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0064220_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0064220_3	UniRef90	UniRef90_R6Y392	Site-specific recombinase XerD	NA
UHGV-0064220_3	eggNOG-mapper	679935.Alfi_0474	Arm DNA-binding domain	NA
UHGV-0064220_3	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0064220_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0064220_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0064220_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0064220_3	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0064220_5	UniRef90	UniRef90_I3YIP8	HTH_17 domain-containing protein	NA
UHGV-0064220_5	eggNOG-mapper	679935.Alfi_0472	Helix-turn-helix domain	NA
UHGV-0064220_5	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0064220_6	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0064220_6	UniRef90	UniRef90_R6YAW6	NA	NA
UHGV-0064220_6	eggNOG-mapper	326298.Suden_1630	NA	NA
UHGV-0064220_6	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0064220_6	Structural annotation	PF19808	NA	NA
UHGV-0064220_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0064220_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0064220_7	UniRef90	UniRef90_A0A1Y3R101	DNA helicase	NA
UHGV-0064220_7	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0064220_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0064220_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0064220_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0064220_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0064220_10	PHROG	phrog_14295	NA	unknown function
UHGV-0064220_10	UniRef90	UniRef90_UPI0002F52239	phage tail tape measure protein	NA
UHGV-0064220_10	eggNOG-mapper	679935.Alfi_0461	NA	NA
UHGV-0064220_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0064220_11	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0064220_11	UniRef90	UniRef90_R6YAW1	ORF6N domain	NA
UHGV-0064220_11	eggNOG-mapper	679935.Alfi_0227	PFAM ORF6N domain	NA
UHGV-0064220_11	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0064220_11	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0064220_11	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0064220_12	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0064220_12	PHROG	phrog_12747	NA	unknown function
UHGV-0064220_12	UniRef90	UniRef90_I3YIN4	Protein involved in cell division	NA
UHGV-0064220_12	eggNOG-mapper	679935.Alfi_0457	FIC family	NA
UHGV-0064220_12	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0064220_12	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0064220_12	Structural annotation	PF02661, NF007672, COG2184	NA	NA
UHGV-0064220_13	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0064220_13	PHROG	phrog_11900	NA	unknown function
UHGV-0064220_13	UniRef90	UniRef90_A0A1Y3QXA1	Cell filamentation protein Fic	NA
UHGV-0064220_13	eggNOG-mapper	742726.HMPREF9448_02005	Fic/DOC family	NA
UHGV-0064220_13	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0064220_13	COG	COG3177	Fic family protein	NA
UHGV-0064220_13	Structural annotation	PF02661, TIGR02613, COG3177	NA	NA
UHGV-0064220_15	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0064220_15	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0064220_15	UniRef90	UniRef90_UPI001CC20A87	thymidylate synthase	NA
UHGV-0064220_15	eggNOG-mapper	1050202.KB913024_gene1347	Thymidylate synthase	NA
UHGV-0064220_15	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0064220_15	COG	COG0207	Thymidylate synthase	NA
UHGV-0064220_15	Structural annotation	PF00303, MF_01686, NF002499, COG0207	NA	NA
UHGV-0064220_16	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0064220_17	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0064220_18	PHROG	phrog_12184	nucleotide pyrophosphohydrolase	other
UHGV-0064220_18	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0064220_18	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0064220_19	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0064220_19	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0064220_19	UniRef90	UniRef90_K2BD34	dUTPase domain-containing protein	NA
UHGV-0064220_19	eggNOG-mapper	1089548.KI783301_gene706	dUTPase	NA
UHGV-0064220_19	Pfam	PF00692	dUTPase	dUTPase
UHGV-0064220_19	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0064220_19	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0064220_21	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0064220_21	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0064220_21	UniRef90	UniRef90_A0A6H0X6Z7	Putative helicase	NA
UHGV-0064220_21	eggNOG-mapper	381046.XP_002553639.1	Saccharomyces cerevisiae YDR332W	NA
UHGV-0064220_21	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0064220_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0064220_21	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0064220_21	Structural annotation	PF16203, PF18766, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0064220_22	UniRef90	UniRef90_A0A1Q1PVI0	Type III restriction endonuclease	NA
UHGV-0064220_24	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0064220_24	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0064220_24	UniRef90	UniRef90_A0A7D5FQG4	Primase (Fragment)	NA
UHGV-0064220_24	eggNOG-mapper	40523.A8ASV1_BPA51	CHC2 zinc finger	NA
UHGV-0064220_24	Structural annotation	PF01807, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0064220_27	KOfam	K18947	gp41; DNA replication helicase [EC:5.6.2.3]	NA
UHGV-0064220_27	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0064220_27	UniRef90	UniRef90_A0A1Q1PVJ6	Helicase	NA
UHGV-0064220_27	eggNOG-mapper	1391188.A0A068EP85_9CAUD	DNA helicase activity	NA
UHGV-0064220_27	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0064220_27	Structural annotation	PF03796, PF00772, MF_04155, NF004384, COG0305	NA	NA
UHGV-0064220_28	Structural annotation	TIGR02985	NA	NA
UHGV-0064220_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0064220_30	PHROG	phrog_435	endolysin	lysis
UHGV-0064220_30	UniRef90	UniRef90_A0A1Q1PVL9	MurNAc-LAA domain-containing protein	NA
UHGV-0064220_30	eggNOG-mapper	742766.HMPREF9455_03106	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064220_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0064220_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0064220_30	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0064220_31	UniRef90	UniRef90_A0A1Q1PVR1	Hydrolase	NA
UHGV-0064220_32	Structural annotation	TIGR02242	NA	NA
UHGV-0064220_33	PHROG	phrog_6	baseplate protein	tail
UHGV-0064220_33	UniRef90	UniRef90_A0A1Q1PVP2	Baseplate	NA
UHGV-0064220_33	eggNOG-mapper	207559.Dde_0947	Baseplate J-like protein	NA
UHGV-0064220_33	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0064220_33	COG	COG3299	NA	NA
UHGV-0064220_33	Structural annotation	PF21379, PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0064220_34	KOfam	K06903	NA	NA
UHGV-0064220_34	PHROG	phrog_261	baseplate wedge subunit	tail
UHGV-0064220_34	eggNOG-mapper	696747.NIES39_G00740	Phage baseplate assembly protein W	NA
UHGV-0064220_34	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0064220_34	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0064220_35	UniRef90	UniRef90_A0A316PC29	Phage_base_V domain-containing protein (Fragment)	NA
UHGV-0064220_35	eggNOG-mapper	908937.Prede_2512	NA	NA
UHGV-0064220_35	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0064220_35	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0064220_36	Structural annotation	PF09096	NA	NA
UHGV-0064220_37	Structural annotation	PF21683, TIGR02126, COG4672	NA	NA
UHGV-0064220_38	UniRef90	UniRef90_A0A316PFT0	LysM domain-containing protein	NA
UHGV-0064220_38	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0064220_38	Structural annotation	PF01476, MF_02014, NF010723, COG5004	NA	NA
UHGV-0064220_39	Structural annotation	PF19266, TIGR01603, COG3499	NA	NA
UHGV-0064220_40	PHROG	phrog_9696	tail length tape measure protein	tail
UHGV-0064220_40	UniRef90	UniRef90_A0A316PI63	Phage tail tape measure protein	NA
UHGV-0064220_40	eggNOG-mapper	1274524.BSONL12_06173	phage tail tape measure protein	NA
UHGV-0064220_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0064220_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0064220_40	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0064220_40	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0064220_42	PHROG	phrog_4542	tail tube protein	tail
UHGV-0064220_42	UniRef90	UniRef90_A0A1V5WQM1	T4-like virus tail tube protein gp19	NA
UHGV-0064220_42	Pfam	PF06841	T4-like virus tail tube protein gp19	Phage_T4_gp19
UHGV-0064220_42	Structural annotation	PF06841, TIGR02241, COG3498	NA	NA
UHGV-0064220_43	KOfam	K06907	NA	NA
UHGV-0064220_43	PHROG	phrog_23	tail sheath	tail
UHGV-0064220_43	UniRef90	UniRef90_A0A1V5WRD1	Phage tail sheath protein	NA
UHGV-0064220_43	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0064220_45	Structural annotation	PF09646	NA	NA
UHGV-0064220_46	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0064220_47	eggNOG-mapper	471855.Shel_19300	NA	NA
UHGV-0064220_49	Structural annotation	PF16570, TIGR02567, COG4893	NA	NA
UHGV-0064220_52	UniRef90	UniRef90_A0A7M1RY81	Lipocalin-like protein	NA
UHGV-0064220_52	eggNOG-mapper	411901.BACCAC_01126	Putative binding domain, N-terminal	NA
UHGV-0064220_52	Structural annotation	PF14874, NF041740, COG5513	NA	NA
UHGV-0064220_53	Structural annotation	PF11649, TIGR01563, COG5614	NA	NA