UHGV-0064507

Genome information

Genome length 44,419 bps

CDS count 53

Completeness 95.39% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064507
vOTU ID	vOTU-068419
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_80310
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.98
Jumbo phage	No

Genome content
Genome length	44,419 bps
GC content	45.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.66%
Average CDS length	770.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064507_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0064507_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0064507_1	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0064507_1	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-0064507_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064507_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0064507_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0064507_3	PHROG	phrog_6058	NA	unknown function
UHGV-0064507_3	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0064507_3	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0064507_3	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0064507_4	Structural annotation	NF041909	NA	NA
UHGV-0064507_5	PHROG	phrog_14367	NA	unknown function
UHGV-0064507_5	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0064507_5	eggNOG-mapper	397291.C804_02419	LysM domain	NA
UHGV-0064507_5	Pfam	PF01476	LysM domain	LysM
UHGV-0064507_5	COG	COG1388	LysM repeat	NA
UHGV-0064507_5	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0064507_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064507_7	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0064507_7	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0064507_7	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0064507_7	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0064507_7	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0064507_7	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0064507_8	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0064507_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064507_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0064507_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0064507_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0064507_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0064507_9	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0064507_9	eggNOG-mapper	1234664.AMRO01000024_gene1791	RecT family	NA
UHGV-0064507_9	Pfam	PF03837	RecT family	RecT
UHGV-0064507_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0064507_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0064507_9	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0064507_10	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0064507_10	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0064507_10	eggNOG-mapper	1178540.BA70_18625	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0064507_10	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0064507_10	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0064507_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0064507_10	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0064507_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0064507_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0064507_18	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0064507_18	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0064507_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0064507_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0064507_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0064507_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0064507_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0064507_19	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-0064507_19	eggNOG-mapper	546268.NEISUBOT_05135	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0064507_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0064507_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0064507_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0064507_19	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0064507_25	PHROG	phrog_15863	NA	unknown function
UHGV-0064507_25	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-0064507_25	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0064507_25	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0064507_26	Structural annotation	PF13983	NA	NA
UHGV-0064507_27	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-0064507_27	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0064507_27	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0064507_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0064507_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0064507_29	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0064507_29	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0064507_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0064507_29	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0064507_31	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0064507_31	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0064507_31	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0064507_31	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0064507_31	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0064507_32	PHROG	phrog_528	NA	unknown function
UHGV-0064507_32	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0064507_33	PHROG	phrog_458	protease	other
UHGV-0064507_33	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0064507_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-0064507_34	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0064507_34	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0064507_34	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0064507_34	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0064507_35	PHROG	phrog_427	NA	unknown function
UHGV-0064507_35	Structural annotation	PF21190	NA	NA
UHGV-0064507_36	PHROG	phrog_394	tail protein	tail
UHGV-0064507_36	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0064507_36	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0064507_36	Structural annotation	PF17212	NA	NA
UHGV-0064507_37	PHROG	phrog_376	tail protein	tail
UHGV-0064507_37	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0064507_37	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0064507_37	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0064507_38	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0064507_38	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0064507_39	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0064507_39	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0064507_39	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0064507_40	PHROG	phrog_10475	endolysin	lysis
UHGV-0064507_40	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0064507_40	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0064507_40	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0064507_41	PHROG	phrog_9880	NA	unknown function
UHGV-0064507_41	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0064507_41	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0064507_41	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0064507_42	PHROG	phrog_1640	tail protein	tail
UHGV-0064507_42	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-0064507_42	COG	COG5434	Polygalacturonase	NA
UHGV-0064507_42	Structural annotation	PF03906	NA	NA
UHGV-0064507_44	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0064507_44	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0064507_44	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0064507_44	Pfam	PF14301	NA	DUF4376
UHGV-0064507_44	Structural annotation	PF14301	NA	NA
UHGV-0064507_45	UniRef90	UniRef90_A0A412X6W3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0064507_45	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-0064507_47	PHROG	phrog_16490	NA	unknown function
UHGV-0064507_48	PHROG	phrog_920	holin	lysis
UHGV-0064507_48	UniRef90	UniRef90_A0A1M6NKZ0	Phage holin T7 family, holin superfamily II	NA
UHGV-0064507_48	Pfam	PF10746	Phage holin T7 family, holin superfamily II	Phage_holin_2_2
UHGV-0064507_49	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0064507_49	PHROG	phrog_894	endolysin	lysis
UHGV-0064507_49	UniRef90	UniRef90_R6WM27	Peptidase M15A	NA
UHGV-0064507_49	eggNOG-mapper	2754.EH55_01340	Peptidase M15	NA
UHGV-0064507_49	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0064507_49	COG	COG3108	NA	NA
UHGV-0064507_49	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0064507_50	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0064507_50	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0064507_50	UniRef90	UniRef90_R6Y139	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0064507_50	eggNOG-mapper	697329.Rumal_1852	Ribonucleoside-triphosphate reductase	NA
UHGV-0064507_50	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0064507_50	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0064507_50	NCBIFam	NF006732.0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0064507_50	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0064507_50	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0064507_51	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064507_51	UniRef90	UniRef90_A0A833CFH0	Endonuclease	NA
UHGV-0064507_51	eggNOG-mapper	889338.G3BM00_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0064507_51	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0064507_51	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0064507_51	Structural annotation	PF13392	NA	NA
UHGV-0064507_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0064507_53	UniRef90	UniRef90_R6Y133	DNA maturase B	NA
UHGV-0064507_53	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0064507_53	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0064507_53	COG	COG5410	NA	NA
UHGV-0064507_53	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-0064507_53	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA