UHGV-0064617

Genome information

Genome length 34,839 bps

CDS count 53

Completeness 87.49% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064617
vOTU ID	vOTU-036844
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_77303
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.63
Jumbo phage	No

Genome content
Genome length	34,839 bps
GC content	46.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.44%
Average CDS length	597.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064617_2	KOfam	K14059	int; integrase	NA
UHGV-0064617_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0064617_2	UniRef90	UniRef90_A0A352UQ74	Site-specific integrase	NA
UHGV-0064617_2	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0064617_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0064617_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0064617_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0064617_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0064617_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0064617_3	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0064617_3	UniRef90	UniRef90_UPI000BE2FD38	Ltp family lipoprotein	NA
UHGV-0064617_3	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0064617_3	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0064617_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0064617_3	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0064617_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0064617_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0064617_4	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-0064617_4	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0064617_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064617_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0064617_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0064617_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0064617_5	UniRef90	UniRef90_A0A1Y4RLF1	NA	NA
UHGV-0064617_5	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0064617_5	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0064617_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0064617_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0064617_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0064617_6	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0064617_6	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0064617_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0064617_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0064617_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0064617_6	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0064617_7	Structural annotation	PF20385	NA	NA
UHGV-0064617_8	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-0064617_8	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0064617_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0064617_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0064617_12	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0064617_12	UniRef90	UniRef90_A0A8J6M3C9	AAA family ATPase	NA
UHGV-0064617_12	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0064617_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0064617_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0064617_13	PHROG	phrog_18107	NA	unknown function
UHGV-0064617_13	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0064617_13	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0064617_13	Structural annotation	PF05037	NA	NA
UHGV-0064617_14	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0064617_14	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0064617_14	eggNOG-mapper	861454.HMPREF9099_00350	ERCC4 domain	NA
UHGV-0064617_14	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0064617_14	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0064617_15	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0064617_15	UniRef90	UniRef90_A0A847VZF6	NA	NA
UHGV-0064617_15	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0064617_15	Pfam	PF06048	NA	DUF927
UHGV-0064617_15	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0064617_15	COG	COG5519	NA	NA
UHGV-0064617_15	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0064617_18	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0064617_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0064617_19	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0064617_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0064617_19	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0064617_20	Structural annotation	PF11132	NA	NA
UHGV-0064617_22	Structural annotation	NF007260	NA	NA
UHGV-0064617_23	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0064617_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0064617_24	UniRef90	UniRef90_A0A415FLQ4	NA	NA
UHGV-0064617_24	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0064617_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0064617_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0064617_25	eggNOG-mapper	1235799.C818_04214	NA	NA
UHGV-0064617_27	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0064617_27	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0064617_27	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0064617_27	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0064617_27	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0064617_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064617_30	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0064617_30	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0064617_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0064617_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0064617_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0064617_31	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0064617_31	eggNOG-mapper	1415774.U728_1256	NA	NA
UHGV-0064617_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0064617_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0064617_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0064617_32	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0064617_32	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0064617_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0064617_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0064617_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0064617_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0064617_33	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0064617_33	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0064617_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0064617_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0064617_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0064617_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0064617_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0064617_34	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0064617_34	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0064617_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0064617_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0064617_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0064617_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0064617_35	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0064617_35	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0064617_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0064617_35	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0064617_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0064617_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0064617_35	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0064617_36	PHROG	phrog_749	NA	unknown function
UHGV-0064617_36	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0064617_37	PHROG	phrog_19734	NA	unknown function
UHGV-0064617_37	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0064617_37	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0064617_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0064617_38	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0064617_38	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0064617_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0064617_39	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0064617_39	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0064617_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0064617_39	Structural annotation	TIGR01725	NA	NA
UHGV-0064617_40	PHROG	phrog_88	major tail protein	tail
UHGV-0064617_40	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0064617_40	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0064617_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0064617_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0064617_42	Structural annotation	PF11836	NA	NA
UHGV-0064617_44	PHROG	phrog_8263	NA	unknown function
UHGV-0064617_44	UniRef90	UniRef90_UPI001D063C90	Ltp family lipoprotein	NA
UHGV-0064617_44	eggNOG-mapper	1485543.JMME01000005_gene857	NA	NA
UHGV-0064617_45	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0064617_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0064617_45	UniRef90	UniRef90_A0A7X5IAQ7	Phage tail tape measure protein	NA
UHGV-0064617_45	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0064617_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0064617_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0064617_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0064617_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0064617_46	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0064617_46	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0064617_46	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0064617_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0064617_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0064617_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0064617_47	PHROG	phrog_3639	minor tail protein	tail
UHGV-0064617_47	UniRef90	UniRef90_R5AIX9	BppU_N domain-containing protein	NA
UHGV-0064617_47	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0064617_47	COG	COG5434	Polygalacturonase	NA
UHGV-0064617_48	UniRef90	UniRef90_R5ANH3	Putative flagellar basal-body rod protein	NA
UHGV-0064617_49	PHROG	phrog_2310	NA	unknown function
UHGV-0064617_49	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0064617_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0064617_50	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0064617_50	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0064617_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0064617_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0064617_50	COG	COG4926	Phage-related protein	NA
UHGV-0064617_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0064617_51	PHROG	phrog_937	hemolysin	other
UHGV-0064617_51	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0064617_53	PHROG	phrog_13256	NA	unknown function
UHGV-0064617_53	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA