UHGV-0064657

Genome information

Genome length 35,913 bps

CDS count 52

Completeness 94.08% (high-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0064657
vOTU ID	vOTU-063528
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_86850
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.61
Jumbo phage	No

Genome content
Genome length	35,913 bps
GC content	39.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.98%
Average CDS length	633.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0064657_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0064657_1	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0064657_1	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0064657_1	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0064657_4	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0064657_4	UniRef90	UniRef90_UPI0006CF4823	NA	NA
UHGV-0064657_4	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-0064657_4	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0064657_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0064657_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0064657_5	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0064657_5	UniRef90	UniRef90_UPI001D0408BC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0064657_5	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0064657_5	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0064657_5	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0064657_5	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0064657_6	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0064657_6	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0064657_6	UniRef90	UniRef90_UPI0018AC627C	recombinase RecT	NA
UHGV-0064657_6	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0064657_6	Pfam	PF03837	RecT family	RecT
UHGV-0064657_6	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0064657_6	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0064657_6	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0064657_7	PHROG	phrog_674	NA	unknown function
UHGV-0064657_7	UniRef90	UniRef90_UPI0018ABB762	NA	NA
UHGV-0064657_7	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0064657_7	Pfam	PF07083	NA	DUF1351
UHGV-0064657_7	Structural annotation	PF07083	NA	NA
UHGV-0064657_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0064657_8	UniRef90	UniRef90_UPI001D0490EC	YqaJ viral recombinase family protein	NA
UHGV-0064657_8	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0064657_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0064657_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0064657_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0064657_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0064657_12	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0064657_13	eggNOG-mapper	742735.HMPREF9467_04919	NA	NA
UHGV-0064657_15	PHROG	phrog_16731	NA	unknown function
UHGV-0064657_15	UniRef90	UniRef90_UPI001EDD26B4	ISAs1 family transposase	NA
UHGV-0064657_15	eggNOG-mapper	411902.CLOBOL_05577	Transposase DDE domain	NA
UHGV-0064657_15	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-0064657_15	NCBIFam	NF033564.0	ISAs1 family transposase	NA
UHGV-0064657_15	COG	COG5433	Predicted transposase YbfD/YdcC associated with H repeats	NA
UHGV-0064657_16	PHROG	phrog_16731	NA	unknown function
UHGV-0064657_16	UniRef90	UniRef90_A0A0E2H278	DDE_Tnp_1 domain-containing protein	NA
UHGV-0064657_16	eggNOG-mapper	411902.CLOBOL_05577	Transposase DDE domain	NA
UHGV-0064657_16	NCBIFam	NF033564.0	ISAs1 family transposase	NA
UHGV-0064657_16	COG	COG5433	Predicted transposase YbfD/YdcC associated with H repeats	NA
UHGV-0064657_17	Structural annotation	NF037954	NA	NA
UHGV-0064657_19	UniRef90	UniRef90_UPI0018AA75E6	helix-turn-helix domain-containing protein	NA
UHGV-0064657_19	eggNOG-mapper	742723.HMPREF9477_00936	Helix-turn-helix	NA
UHGV-0064657_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064657_19	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0064657_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0064657_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0064657_20	UniRef90	UniRef90_A0A374BSX4	XRE family transcriptional regulator	NA
UHGV-0064657_20	eggNOG-mapper	742723.HMPREF9477_00937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0064657_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0064657_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0064657_20	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0064657_21	PHROG	phrog_87	metallo-protease	other
UHGV-0064657_21	UniRef90	UniRef90_UPI001D01270F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0064657_21	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0064657_21	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0064657_21	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0064657_21	Structural annotation	PF06114, COG3800	NA	NA
UHGV-0064657_22	PHROG	phrog_3364	NA	unknown function
UHGV-0064657_22	UniRef90	UniRef90_UPI001EDFA2AF	ATP-binding protein	NA
UHGV-0064657_22	eggNOG-mapper	397291.C804_05801	Histidine kinase	NA
UHGV-0064657_22	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0064657_22	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172, COG1366	NA	NA
UHGV-0064657_23	UniRef90	UniRef90_UPI0018A974CA	STAS-like domain-containing protein	NA
UHGV-0064657_23	eggNOG-mapper	1121324.CLIT_8c00570	NA	NA
UHGV-0064657_23	Pfam	PF14213	NA	DUF4325
UHGV-0064657_24	UniRef90	UniRef90_UPI0018AC4F56	PIN domain-containing protein	NA
UHGV-0064657_24	eggNOG-mapper	397291.C804_05799	NA	NA
UHGV-0064657_24	Structural annotation	PF01850, MF_00265, NF010285, COG5573	NA	NA
UHGV-0064657_25	PHROG	phrog_16228	NA	unknown function
UHGV-0064657_25	UniRef90	UniRef90_UPI0018A968AC	Uma2 family endonuclease	NA
UHGV-0064657_25	eggNOG-mapper	471875.RUMLAC_01754	Putative restriction endonuclease	NA
UHGV-0064657_25	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0064657_25	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0064657_25	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0064657_26	KOfam	K14059	int; integrase	NA
UHGV-0064657_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0064657_26	UniRef90	UniRef90_UPI0018A893E8	site-specific integrase	NA
UHGV-0064657_26	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0064657_26	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0064657_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0064657_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0064657_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0064657_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0064657_27	PHROG	phrog_291	endolysin	lysis
UHGV-0064657_27	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0064657_27	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0064657_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0064657_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0064657_27	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0064657_28	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0064657_29	PHROG	phrog_18218	NA	unknown function
UHGV-0064657_29	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-0064657_29	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0064657_29	Structural annotation	PF06946	NA	NA
UHGV-0064657_30	PHROG	phrog_1863	NA	unknown function
UHGV-0064657_30	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0064657_31	UniRef90	UniRef90_UPI001C0F3DBD	NA	NA
UHGV-0064657_31	eggNOG-mapper	1196322.A370_04225	NA	NA
UHGV-0064657_32	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0064657_32	UniRef90	UniRef90_UPI0018AA7767	GDSL-type esterase/lipase family protein	NA
UHGV-0064657_32	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0064657_33	PHROG	phrog_14030	NA	unknown function
UHGV-0064657_33	UniRef90	UniRef90_UPI0018A8CA3B	phage tail tip lysozyme	NA
UHGV-0064657_33	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0064657_33	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0064657_33	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0064657_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0064657_33	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0064657_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0064657_34	UniRef90	UniRef90_UPI0018A95F43	phage tail protein	NA
UHGV-0064657_34	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0064657_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0064657_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0064657_34	COG	COG4926	Phage-related protein	NA
UHGV-0064657_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0064657_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0064657_35	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0064657_35	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0064657_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0064657_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0064657_36	PHROG	phrog_19074	NA	unknown function
UHGV-0064657_36	UniRef90	UniRef90_UPI0018ABC231	phage tail tape measure protein	NA
UHGV-0064657_36	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0064657_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0064657_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0064657_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0064657_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0064657_37	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0064657_37	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0064657_38	PHROG	phrog_706	NA	unknown function
UHGV-0064657_38	UniRef90	UniRef90_UPI0018AAC0D2	Gp15 family bacteriophage protein	NA
UHGV-0064657_38	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0064657_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0064657_38	Structural annotation	PF06854	NA	NA
UHGV-0064657_39	PHROG	phrog_4450	NA	unknown function
UHGV-0064657_39	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0064657_39	eggNOG-mapper	658655.HMPREF0988_02554	NA	NA
UHGV-0064657_39	Pfam	PF20378	NA	DUF6673
UHGV-0064657_39	Structural annotation	PF20378	NA	NA
UHGV-0064657_40	PHROG	phrog_3099	NA	unknown function
UHGV-0064657_40	eggNOG-mapper	658655.HMPREF0988_02555	NA	NA
UHGV-0064657_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0064657_41	PHROG	phrog_3266	tail completion	connector
UHGV-0064657_41	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0064657_41	Structural annotation	PF12691	NA	NA
UHGV-0064657_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0064657_42	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0064657_42	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0064657_42	Structural annotation	PF11114	NA	NA
UHGV-0064657_43	PHROG	phrog_3366	NA	unknown function
UHGV-0064657_43	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0064657_43	Pfam	PF20536	NA	DUF6751
UHGV-0064657_43	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0064657_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0064657_44	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0064657_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0064657_45	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0064657_45	Structural annotation	PF19821, MF_04119, TIGR04387	NA	NA
UHGV-0064657_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0064657_46	UniRef90	UniRef90_A0A1C5W5U5	Phage minor structural protein GP20	NA
UHGV-0064657_46	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0064657_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0064657_46	Structural annotation	PF06810	NA	NA
UHGV-0064657_47	eggNOG-mapper	742765.HMPREF9457_02124	NA	NA
UHGV-0064657_48	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0064657_48	UniRef90	UniRef90_UPI0018AA9658	phage minor capsid protein	NA
UHGV-0064657_48	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0064657_48	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0064657_48	COG	COG2369	NA	NA
UHGV-0064657_48	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0064657_49	PHROG	phrog_533	portal protein	head and packaging
UHGV-0064657_49	UniRef90	UniRef90_A0A414QMA7	Phage capsid protein	NA
UHGV-0064657_49	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0064657_49	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0064657_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0064657_50	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0064657_50	UniRef90	UniRef90_A0A173ZBW3	Phage terminase, large subunit, PBSX family	NA
UHGV-0064657_50	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0064657_50	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0064657_50	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0064657_50	COG	COG1783	Phage terminase large subunit	NA
UHGV-0064657_50	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0064657_51	PHROG	phrog_2412	NA	unknown function
UHGV-0064657_51	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0064657_51	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA