UHGV-0065044

Genome information

Genome length 33,857 bps

CDS count 63

Completeness 59.23% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065044
vOTU ID	vOTU-024865
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_68866
BioSample	SAMEA2338646
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.91
Jumbo phage	No

Genome content
Genome length	33,857 bps
GC content	36.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	86.43%
Average CDS length	468.33 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065044_1	UniRef90	UniRef90_X8ITJ1	Putative lipoprotein	NA
UHGV-0065044_1	eggNOG-mapper	742765.HMPREF9457_02335	transposase IS116 IS110 IS902 family	NA
UHGV-0065044_1	COG	COG3547	Transposase	NA
UHGV-0065044_2	PHROG	phrog_29	major head protein	head and packaging
UHGV-0065044_2	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0065044_2	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0065044_2	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0065044_2	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0065044_3	PHROG	phrog_909	major head protein	head and packaging
UHGV-0065044_3	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0065044_4	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0065044_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0065044_5	UniRef90	UniRef90_R7BGE4	SPP1 family phage portal protein	NA
UHGV-0065044_5	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0065044_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0065044_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0065044_6	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0065044_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065044_7	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0065044_7	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0065044_7	Pfam	PF07374	NA	DUF1492
UHGV-0065044_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0065044_7	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0065044_8	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0065044_8	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0065044_8	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0065044_8	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0065044_8	COG	COG5410	NA	NA
UHGV-0065044_8	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0065044_11	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0065044_14	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0065044_14	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0065044_15	PHROG	phrog_14314	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065044_15	UniRef90	UniRef90_A0A8D9PGN5	HNH endonuclease	NA
UHGV-0065044_15	eggNOG-mapper	349521.HCH_04433	endonuclease activity	NA
UHGV-0065044_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0065044_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0065044_15	Structural annotation	PF01844	NA	NA
UHGV-0065044_16	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0065044_16	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0065044_17	PHROG	phrog_236	nucleotide kinase	other
UHGV-0065044_17	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-0065044_17	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0065044_17	Pfam	PF11753	NA	DUF3310
UHGV-0065044_17	Structural annotation	PF11753	NA	NA
UHGV-0065044_18	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0065044_18	UniRef90	UniRef90_A0A8D9PGJ8	MazG domain-containing protein	NA
UHGV-0065044_18	eggNOG-mapper	537007.BLAHAN_05009	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0065044_18	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0065044_18	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0065044_18	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0065044_19	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0065044_19	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0065044_22	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-0065044_22	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0065044_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0065044_22	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0065044_23	PHROG	phrog_11100	NA	unknown function
UHGV-0065044_23	eggNOG-mapper	1283077.M1ICI7_9CAUD	NA	NA
UHGV-0065044_26	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-0065044_26	UniRef90	UniRef90_UPI0015707911	CRISPR-associated protein Cas5	NA
UHGV-0065044_26	eggNOG-mapper	1297581.H919_00025	CRISPR-associated protein (Cas_Cas5)	NA
UHGV-0065044_26	PADLOC	cas_Cas5t	CRISPR-associated protein Cas5, subtype I-B/TNEAP	CRISPR-CAS
UHGV-0065044_26	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-0065044_26	Structural annotation	PF09704, TIGR01895, COG1688	NA	NA
UHGV-0065044_28	PHROG	phrog_1233	NA	unknown function
UHGV-0065044_28	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0065044_28	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0065044_29	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0065044_30	PHROG	phrog_20016	NA	unknown function
UHGV-0065044_30	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0065044_30	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0065044_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0065044_31	PHROG	phrog_16490	NA	unknown function
UHGV-0065044_31	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0065044_32	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0065044_33	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0065044_33	Structural annotation	NF033819	NA	NA
UHGV-0065044_35	KOfam	K14059	int; integrase	NA
UHGV-0065044_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0065044_35	UniRef90	UniRef90_A0A292SPJ9	Site-specific integrase (Fragment)	NA
UHGV-0065044_35	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0065044_35	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0065044_35	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0065044_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065044_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0065044_35	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0065044_36	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0065044_36	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0065044_36	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0065044_36	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0065044_36	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0065044_36	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0065044_39	PHROG	phrog_9804	NA	unknown function
UHGV-0065044_39	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0065044_39	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0065044_39	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0065044_39	Structural annotation	PF11417	NA	NA
UHGV-0065044_41	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0065044_41	UniRef90	UniRef90_A0A2P1JTY8	DNA replication protein	NA
UHGV-0065044_41	eggNOG-mapper	1111134.HMPREF1253_0393	Transcriptional regulator	NA
UHGV-0065044_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0065044_41	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0065044_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0065044_44	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0065044_44	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0065044_44	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0065044_44	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0065044_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0065044_44	COG	COG0863	DNA modification methylase	NA
UHGV-0065044_44	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0065044_47	PHROG	phrog_19106	NA	unknown function
UHGV-0065044_47	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0065044_47	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0065044_47	Structural annotation	TIGR01453	NA	NA
UHGV-0065044_49	PHROG	phrog_10714	NA	unknown function
UHGV-0065044_49	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0065044_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065044_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065044_50	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0065044_50	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0065044_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065044_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0065044_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065044_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0065044_50	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0065044_52	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0065044_52	eggNOG-mapper	1408423.JHYA01000024_gene1215	NA	NA
UHGV-0065044_52	Pfam	PF07866	NA	DUF1653
UHGV-0065044_52	COG	COG4728	NA	NA
UHGV-0065044_52	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0065044_53	PHROG	phrog_8684	NA	unknown function
UHGV-0065044_53	UniRef90	UniRef90_UPI000E50DC0C	YopX family protein	NA
UHGV-0065044_53	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0065044_53	Pfam	PF09643	YopX protein	YopX
UHGV-0065044_53	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0065044_53	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0065044_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065044_55	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0065044_55	Structural annotation	PF18597	NA	NA
UHGV-0065044_57	PHROG	phrog_4400	NA	unknown function
UHGV-0065044_57	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0065044_57	dbAPIS	APIS056	NA	NA
UHGV-0065044_57	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0065044_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0065044_58	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0065044_58	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0065044_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0065044_58	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0065044_59	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0065044_59	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0065044_59	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0065044_59	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0065044_59	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0065044_61	PHROG	phrog_25456	NA	unknown function
UHGV-0065044_62	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0065044_62	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0065044_62	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0065044_62	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0065044_62	Pfam	PF03837	RecT family	RecT
UHGV-0065044_62	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0065044_62	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0065044_63	PHROG	phrog_27197	NA	unknown function
UHGV-0065044_63	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0065044_63	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0065044_63	Structural annotation	NF007410	NA	NA