UHGV-0065137

Genome information

Genome length 20,388 bps

CDS count 30

Completeness 54.52% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065137
vOTU ID	vOTU-022196
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_94799
BioSample	SAMEA2466962
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.75
Jumbo phage	No

Genome content
Genome length	20,388 bps
GC content	46.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.80%
Average CDS length	654.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065137_1	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0065137_1	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0065137_1	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0065137_1	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0065137_1	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0065137_2	PHROG	phrog_24490	NA	unknown function
UHGV-0065137_4	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0065137_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0065137_9	UniRef90	UniRef90_A0A8G1WT09	MazG domain-containing protein	NA
UHGV-0065137_9	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0065137_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065137_11	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0065137_12	PHROG	phrog_2412	NA	unknown function
UHGV-0065137_12	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0065137_12	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0065137_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0065137_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0065137_13	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0065137_13	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0065137_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0065137_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0065137_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0065137_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0065137_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0065137_14	UniRef90	UniRef90_UPI001C1263AE	phage portal protein	NA
UHGV-0065137_14	eggNOG-mapper	641112.ACOK01000073_gene2889	NA	NA
UHGV-0065137_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0065137_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0065137_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0065137_15	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0065137_15	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0065137_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0065137_15	COG	COG2369	NA	NA
UHGV-0065137_15	Structural annotation	PF06152	NA	NA
UHGV-0065137_17	PHROG	phrog_1048	NA	unknown function
UHGV-0065137_17	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0065137_17	eggNOG-mapper	358220.C380_09735	NA	NA
UHGV-0065137_17	Pfam	PF11195	NA	DUF2829
UHGV-0065137_17	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0065137_17	Structural annotation	PF11195	NA	NA
UHGV-0065137_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0065137_18	UniRef90	UniRef90_A0A174LGM6	Phage minor structural protein GP20	NA
UHGV-0065137_18	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0065137_18	Structural annotation	PF06810	NA	NA
UHGV-0065137_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0065137_19	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0065137_19	eggNOG-mapper	641112.ACOK01000073_gene2894	NA	NA
UHGV-0065137_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0065137_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0065137_20	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0065137_21	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0065137_21	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0065137_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0065137_22	UniRef90	UniRef90_A0A8G0W2X2	Minor capsid protein	NA
UHGV-0065137_22	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0065137_22	Structural annotation	PF11114	NA	NA
UHGV-0065137_23	PHROG	phrog_3266	tail completion	connector
UHGV-0065137_23	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0065137_23	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0065137_23	Structural annotation	PF12691	NA	NA
UHGV-0065137_24	PHROG	phrog_3099	NA	unknown function
UHGV-0065137_24	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0065137_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0065137_25	PHROG	phrog_4450	NA	unknown function
UHGV-0065137_25	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0065137_25	Pfam	PF20378	NA	DUF6673
UHGV-0065137_25	Structural annotation	PF20378	NA	NA
UHGV-0065137_26	PHROG	phrog_706	NA	unknown function
UHGV-0065137_26	UniRef90	UniRef90_UPI00156F6A1F	Gp15 family bacteriophage protein	NA
UHGV-0065137_26	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0065137_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0065137_26	Structural annotation	PF06854	NA	NA
UHGV-0065137_27	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0065137_27	UniRef90	UniRef90_A0A3A6DL62	Phage tail tape measure protein	NA
UHGV-0065137_27	eggNOG-mapper	411459.RUMOBE_01065	phage tail tape measure protein	NA
UHGV-0065137_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0065137_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0065137_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0065137_27	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0065137_28	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-0065137_29	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0065137_30	PHROG	phrog_25888	NA	unknown function
UHGV-0065137_30	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-0065137_30	COG	COG3468	Autotransporter adhesin AidA	NA