UHGV-0065149

Genome information

Genome length 38,958 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065149
vOTU ID	vOTU-065609
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_85580
BioSample	SAMEA2338657
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.53
Jumbo phage	No

Genome content
Genome length	38,958 bps
GC content	48.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.12%
Average CDS length	685.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065149_1	KOfam	K14059	int; integrase	NA
UHGV-0065149_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0065149_1	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0065149_1	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0065149_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065149_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0065149_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0065149_2	PHROG	phrog_5783	NA	unknown function
UHGV-0065149_2	UniRef90	UniRef90_R5XZX4	NYN domain-containing protein	NA
UHGV-0065149_2	eggNOG-mapper	1219581.HMPREF1628_01875	NYN domain	NA
UHGV-0065149_2	Pfam	PF01936	NYN domain	NYN
UHGV-0065149_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0065149_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0065149_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0065149_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0065149_3	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-0065149_3	eggNOG-mapper	641112.ACOK01000103_gene520	DNA-binding helix-turn-helix protein	NA
UHGV-0065149_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065149_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0065149_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0065149_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0065149_4	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0065149_4	UniRef90	UniRef90_A0A374UNQ5	XRE family transcriptional regulator	NA
UHGV-0065149_4	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0065149_4	Pfam	PF05339	NA	DUF739
UHGV-0065149_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0065149_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0065149_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0065149_7	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-0065149_7	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-0065149_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0065149_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0065149_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0065149_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0065149_9	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0065149_9	PHROG	phrog_18750	NA	unknown function
UHGV-0065149_9	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0065149_9	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-0065149_9	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0065149_9	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0065149_9	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0065149_10	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0065149_10	PHROG	phrog_7713	NA	unknown function
UHGV-0065149_10	UniRef90	UniRef90_UPI0009F73A1A	pentapeptide repeat-containing protein	NA
UHGV-0065149_10	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0065149_10	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0065149_10	COG	COG1357	NA	NA
UHGV-0065149_10	Structural annotation	PF13599, PF18350, MF_01354, NF000420, COG4873	NA	NA
UHGV-0065149_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0065149_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065149_12	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0065149_12	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-0065149_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065149_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065149_12	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0065149_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0065149_13	PHROG	phrog_1499	NA	unknown function
UHGV-0065149_13	UniRef90	UniRef90_R6IXY5	AAA_15 domain-containing protein	NA
UHGV-0065149_13	eggNOG-mapper	478749.BRYFOR_07583	domain protein	NA
UHGV-0065149_13	PADLOC	AAA_15	NA	NA
UHGV-0065149_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0065149_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0065149_13	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0065149_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0065149_14	UniRef90	UniRef90_UPI001411FE86	ATP-binding protein	NA
UHGV-0065149_14	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-0065149_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0065149_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0065149_15	PHROG	phrog_2698	NA	unknown function
UHGV-0065149_15	UniRef90	UniRef90_A0A417IL23	NA	NA
UHGV-0065149_15	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-0065149_15	Structural annotation	PF05037	NA	NA
UHGV-0065149_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0065149_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0065149_16	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-0065149_16	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-0065149_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0065149_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0065149_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0065149_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0065149_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0065149_17	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0065149_17	UniRef90	UniRef90_A0A8J6IQY0	Helix-turn-helix transcriptional regulator	NA
UHGV-0065149_17	eggNOG-mapper	573061.Clocel_3551	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0065149_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0065149_17	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0065149_17	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0065149_19	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065149_19	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-0065149_19	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0065149_19	Structural annotation	PF17375	NA	NA
UHGV-0065149_20	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0065149_20	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0065149_20	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-0065149_20	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0065149_20	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0065149_20	Pfam	PF13481	AAA domain	AAA_25
UHGV-0065149_20	COG	COG3598	RecA-family ATPase	NA
UHGV-0065149_20	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0065149_21	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0065149_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065149_21	UniRef90	UniRef90_A0A7U9XIP0	HTH-type transcriptional regulator ImmR	NA
UHGV-0065149_21	eggNOG-mapper	1204534.J9QD19_9CAUD	sequence-specific DNA binding	NA
UHGV-0065149_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065149_21	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0065149_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0065149_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0065149_24	UniRef90	UniRef90_R6HY68	Endodeoxyribonuclease RusA	NA
UHGV-0065149_24	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-0065149_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0065149_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0065149_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0065149_25	Structural annotation	NF001606	NA	NA
UHGV-0065149_26	PHROG	phrog_98	NA	unknown function
UHGV-0065149_26	UniRef90	UniRef90_A0A355KXQ4	YopX domain-containing protein	NA
UHGV-0065149_26	eggNOG-mapper	797515.HMPREF9103_02492	YopX protein	NA
UHGV-0065149_26	Pfam	PF09643	YopX protein	YopX
UHGV-0065149_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0065149_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0065149_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065149_27	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0065149_27	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0065149_27	Structural annotation	PF04545	NA	NA
UHGV-0065149_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0065149_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0065149_28	UniRef90	UniRef90_A0A1Q9JQ42	Terminase small subunit	NA
UHGV-0065149_28	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0065149_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0065149_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0065149_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0065149_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0065149_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0065149_29	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0065149_29	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0065149_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0065149_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0065149_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0065149_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0065149_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0065149_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0065149_30	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0065149_30	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0065149_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0065149_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0065149_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0065149_31	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-0065149_31	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0065149_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0065149_31	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0065149_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0065149_31	COG	COG2369	NA	NA
UHGV-0065149_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0065149_33	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0065149_33	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-0065149_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0065149_34	PHROG	phrog_283	major head protein	head and packaging
UHGV-0065149_34	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0065149_34	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0065149_34	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0065149_34	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0065149_35	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0065149_35	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-0065149_35	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-0065149_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0065149_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0065149_37	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0065149_37	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0065149_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0065149_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0065149_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0065149_38	Structural annotation	PF05657	NA	NA
UHGV-0065149_39	PHROG	phrog_158	major tail protein	tail
UHGV-0065149_39	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0065149_39	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0065149_39	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0065149_40	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0065149_40	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0065149_40	Structural annotation	PF19591	NA	NA
UHGV-0065149_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0065149_41	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0065149_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0065149_42	PHROG	phrog_26910	NA	unknown function
UHGV-0065149_42	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-0065149_43	PHROG	phrog_1194	NA	unknown function
UHGV-0065149_43	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-0065149_43	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0065149_43	Pfam	PF20458	NA	DUF6711
UHGV-0065149_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0065149_44	PHROG	phrog_6616	tail protein	tail
UHGV-0065149_44	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0065149_44	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0065149_44	COG	COG4926	Phage-related protein	NA
UHGV-0065149_44	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0065149_46	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0065149_46	Structural annotation	PF08481	NA	NA
UHGV-0065149_49	PHROG	phrog_27545	NA	unknown function
UHGV-0065149_49	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0065149_49	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0065149_50	PHROG	phrog_1863	NA	unknown function
UHGV-0065149_50	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0065149_51	PHROG	phrog_7698	endolysin	lysis
UHGV-0065149_51	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-0065149_51	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0065149_51	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0065149_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0065149_51	Structural annotation	PF08230	NA	NA
UHGV-0065149_52	PHROG	phrog_608	holin	lysis
UHGV-0065149_52	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0065149_52	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0065149_52	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1