UHGV-0065170

Genome information

Genome length 29,395 bps

CDS count 36

Completeness 78.92% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065170
vOTU ID	vOTU-039706
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_80815
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.67
Jumbo phage	No

Genome content
Genome length	29,395 bps
GC content	44.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.63%
Average CDS length	768.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065170_1	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0065170_2	PHROG	phrog_8470	NA	unknown function
UHGV-0065170_2	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0065170_2	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0065170_2	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0065170_2	Structural annotation	PF14284	NA	NA
UHGV-0065170_3	PHROG	phrog_15077	NA	unknown function
UHGV-0065170_3	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0065170_3	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0065170_3	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0065170_4	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0065170_5	PHROG	phrog_7566	NA	unknown function
UHGV-0065170_5	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0065170_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065170_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065170_6	UniRef90	UniRef90_UPI001D090A50	single-stranded DNA-binding protein	NA
UHGV-0065170_6	eggNOG-mapper	411469.EUBHAL_00362	Single-stranded DNA-binding protein	NA
UHGV-0065170_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065170_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0065170_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065170_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0065170_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0065170_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065170_13	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0065170_13	Structural annotation	PF02996	NA	NA
UHGV-0065170_15	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0065170_15	UniRef90	UniRef90_A0A1C5MP22	Predicted membrane protein	NA
UHGV-0065170_15	eggNOG-mapper	585501.HMPREF6123_0812	NA	NA
UHGV-0065170_15	Pfam	PF10097	NA	DUF2335
UHGV-0065170_15	COG	COG5346	NA	NA
UHGV-0065170_15	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0065170_17	UniRef90	UniRef90_A0A1Y4H070	Chemotaxis protein	NA
UHGV-0065170_17	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0065170_17	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0065170_18	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0065170_18	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0065170_18	UniRef90	UniRef90_A0A1Y3T0V1	DNA methylase	NA
UHGV-0065170_18	eggNOG-mapper	1298920.KI911353_gene2697	COG COG0338 Site-specific DNA methylase	NA
UHGV-0065170_18	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0065170_18	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0065170_18	COG	COG0338	DNA-adenine methylase	NA
UHGV-0065170_18	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0065170_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065170_19	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-0065170_19	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0065170_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0065170_20	PHROG	phrog_1066	NA	unknown function
UHGV-0065170_20	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0065170_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0065170_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0065170_21	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-0065170_21	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-0065170_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0065170_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0065170_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0065170_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0065170_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0065170_22	UniRef90	UniRef90_A0A1C6K9V7	Phage portal protein, HK97 family	NA
UHGV-0065170_22	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0065170_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0065170_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0065170_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0065170_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0065170_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0065170_23	UniRef90	UniRef90_A0A1C6KA38	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0065170_23	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0065170_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0065170_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0065170_23	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0065170_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0065170_24	UniRef90	UniRef90_A0A1C6KA65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0065170_24	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0065170_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0065170_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0065170_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0065170_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0065170_25	PHROG	phrog_5223	neck protein	connector
UHGV-0065170_25	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0065170_25	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0065170_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0065170_26	eggNOG-mapper	358681.BBR47_29190	head-tail adaptor	NA
UHGV-0065170_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0065170_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0065170_27	eggNOG-mapper	1123075.AUDP01000020_gene1517	NA	NA
UHGV-0065170_27	Structural annotation	PF05657	NA	NA
UHGV-0065170_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0065170_28	UniRef90	UniRef90_A0A1C6IVB7	Phage protein, HK97 gp10 family	NA
UHGV-0065170_28	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0065170_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0065170_28	Structural annotation	TIGR01725	NA	NA
UHGV-0065170_29	PHROG	phrog_88	major tail protein	tail
UHGV-0065170_29	UniRef90	UniRef90_A0A1C6KA12	Phage major tail protein, phi13 family	NA
UHGV-0065170_29	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0065170_29	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0065170_30	PHROG	phrog_2115	tail protein	tail
UHGV-0065170_30	Structural annotation	PF11836	NA	NA
UHGV-0065170_31	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0065170_31	PHROG	phrog_5218	NA	unknown function
UHGV-0065170_31	UniRef90	UniRef90_A0A3D4XBJ1	PhageMin_Tail domain-containing protein (Fragment)	NA
UHGV-0065170_31	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0065170_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0065170_31	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0065170_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0065170_32	UniRef90	UniRef90_A0A1I5ISJ1	Phage-related protein	NA
UHGV-0065170_32	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0065170_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-0065170_32	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0065170_34	PHROG	phrog_1401	NA	unknown function
UHGV-0065170_34	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0065170_34	eggNOG-mapper	195103.CPF_0968	NA	NA
UHGV-0065170_34	Structural annotation	PF07761	NA	NA
UHGV-0065170_35	PHROG	phrog_36443	NA	unknown function
UHGV-0065170_35	UniRef90	UniRef90_UPI00164ECC46	phage tail protein	NA
UHGV-0065170_35	eggNOG-mapper	1347392.CCEZ01000045_gene1	Phage minor structural protein	NA
UHGV-0065170_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0065170_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0065170_35	COG	COG4926	Phage-related protein	NA
UHGV-0065170_35	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA