UHGV-0065178

Genome information

vOTU vOTU-042017

Genome length 35,981 bps

CDS count 51

Completeness 83.94% (medium-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065178
vOTU ID	vOTU-042017
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_104866
BioSample	SAMEA2467066
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.68
Jumbo phage	No

Genome content
Genome length	35,981 bps
GC content	29.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.09%
Average CDS length	666.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065178_2	PHROG	phrog_372	tail protein	tail
UHGV-0065178_2	UniRef90	UniRef90_UPI001B842501	NA	NA
UHGV-0065178_2	eggNOG-mapper	411465.PEPMIC_00747	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0065178_2	Pfam	PF05895	NA	DUF859
UHGV-0065178_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0065178_2	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0065178_3	PHROG	phrog_18110	NA	unknown function
UHGV-0065178_3	UniRef90	UniRef90_A0A845R011	Prophage_tail domain-containing protein	NA
UHGV-0065178_3	eggNOG-mapper	1321784.HMPREF1987_01084	Phage minor structural protein	NA
UHGV-0065178_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0065178_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0065178_3	COG	COG4926	Phage-related protein	NA
UHGV-0065178_3	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0065178_5	PHROG	phrog_19074	NA	unknown function
UHGV-0065178_5	UniRef90	UniRef90_A0A133YTW6	PhageMin_Tail domain-containing protein	NA
UHGV-0065178_5	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0065178_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0065178_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0065178_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0065178_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0065178_6	PHROG	phrog_706	NA	unknown function
UHGV-0065178_6	UniRef90	UniRef90_F0H2B4	Bacteriophage Gp15 protein	NA
UHGV-0065178_6	eggNOG-mapper	525255.HMPREF0077_0377	Bacteriophage Gp15 protein	NA
UHGV-0065178_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0065178_6	Structural annotation	PF06854	NA	NA
UHGV-0065178_7	Structural annotation	PF10666	NA	NA
UHGV-0065178_8	PHROG	phrog_3099	NA	unknown function
UHGV-0065178_8	eggNOG-mapper	525255.HMPREF0077_0379	NA	NA
UHGV-0065178_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0065178_9	PHROG	phrog_3266	tail completion	connector
UHGV-0065178_9	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-0065178_9	eggNOG-mapper	525255.HMPREF0077_0380	NA	NA
UHGV-0065178_9	Structural annotation	PF12691	NA	NA
UHGV-0065178_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0065178_10	UniRef90	UniRef90_UPI000D0B2B2F	minor capsid protein	NA
UHGV-0065178_10	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0065178_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0065178_10	Structural annotation	PF11114	NA	NA
UHGV-0065178_11	PHROG	phrog_3366	NA	unknown function
UHGV-0065178_11	Pfam	PF20536	NA	DUF6751
UHGV-0065178_11	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0065178_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0065178_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0065178_13	UniRef90	UniRef90_UPI0016517AAC	phage coat protein	NA
UHGV-0065178_13	eggNOG-mapper	1095750.HMPREF9970_0286	NA	NA
UHGV-0065178_13	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0065178_13	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0065178_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0065178_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0065178_14	UniRef90	UniRef90_F0H2C2	Phage minor structural protein GP20	NA
UHGV-0065178_14	eggNOG-mapper	525255.HMPREF0077_0385	Phage minor structural protein GP20	NA
UHGV-0065178_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0065178_14	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0065178_15	eggNOG-mapper	944565.HMPREF9127_0402	NA	NA
UHGV-0065178_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0065178_16	UniRef90	UniRef90_A0A6N7VR66	Ntox50 domain-containing protein	NA
UHGV-0065178_16	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-0065178_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0065178_16	COG	COG2369	NA	NA
UHGV-0065178_16	Structural annotation	PF06152, PF15542	NA	NA
UHGV-0065178_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0065178_17	UniRef90	UniRef90_C2CFY1	Putative phage minor capsid protein	NA
UHGV-0065178_17	eggNOG-mapper	525255.HMPREF0077_0391	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0065178_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0065178_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0065178_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0065178_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0065178_18	UniRef90	UniRef90_E1KWJ3	Phage terminase, large subunit, PBSX family	NA
UHGV-0065178_18	eggNOG-mapper	562981.HMPREF0428_01824	Phage terminase, large subunit	NA
UHGV-0065178_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0065178_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0065178_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0065178_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0065178_19	PHROG	phrog_2412	NA	unknown function
UHGV-0065178_19	UniRef90	UniRef90_A0A8I2FGB8	Stress-induced protein	NA
UHGV-0065178_19	eggNOG-mapper	120574.Q8SBI2_9CAUD	NA	NA
UHGV-0065178_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065178_21	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0065178_21	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0065178_21	UniRef90	UniRef90_A0A133YZU3	dUTPase domain-containing protein	NA
UHGV-0065178_21	eggNOG-mapper	1095770.CAHE01000089_gene1793	dUTPase	NA
UHGV-0065178_21	Pfam	PF00692	dUTPase	dUTPase
UHGV-0065178_21	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0065178_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0065178_21	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0065178_24	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0065178_24	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0065178_24	UniRef90	UniRef90_G2G0Y3	Putative n6 adenine-specific dna methyltransferase protein	NA
UHGV-0065178_24	eggNOG-mapper	411465.PEPMIC_00725	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0065178_24	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0065178_24	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0065178_24	COG	COG0338	DNA-adenine methylase	NA
UHGV-0065178_24	Structural annotation	TIGR00571, COG0338	NA	NA
UHGV-0065178_25	PHROG	phrog_6072	NA	unknown function
UHGV-0065178_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0065178_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0065178_27	UniRef90	UniRef90_UPI00156258B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0065178_27	eggNOG-mapper	521460.Athe_2445	PFAM endodeoxyribonuclease RusA	NA
UHGV-0065178_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0065178_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0065178_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0065178_28	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0065178_28	UniRef90	UniRef90_UPI001238D48C	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0065178_28	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0065178_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0065178_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0065178_28	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0065178_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065178_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065178_29	UniRef90	UniRef90_F9PRK7	Single-strand binding domain protein	NA
UHGV-0065178_29	eggNOG-mapper	411465.PEPMIC_01530	Single-stranded DNA-binding protein	NA
UHGV-0065178_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065178_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065178_30	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0065178_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0065178_30	UniRef90	UniRef90_UPI001238EEA1	MBL fold metallo-hydrolase	NA
UHGV-0065178_30	eggNOG-mapper	1118055.CAGU01000029_gene41	Beta-lactamase superfamily domain	NA
UHGV-0065178_30	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0065178_30	dbAPIS	APIS058	NA	NA
UHGV-0065178_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0065178_30	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0065178_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0065178_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0065178_32	UniRef90	UniRef90_UPI00123BD6CE	recombinase RecT	NA
UHGV-0065178_32	eggNOG-mapper	1499683.CCFF01000017_gene2606	RecT family	NA
UHGV-0065178_32	Pfam	PF03837	RecT family	RecT
UHGV-0065178_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0065178_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0065178_33	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0065178_33	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065178_33	UniRef90	UniRef90_UPI00123AEA10	NA	NA
UHGV-0065178_33	eggNOG-mapper	1118057.CAGX01000058_gene105	nuclear chromosome segregation	NA
UHGV-0065178_33	Pfam	PF13476	AAA domain	AAA_23
UHGV-0065178_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0065178_33	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0065178_34	PHROG	phrog_3392	NA	unknown function
UHGV-0065178_34	eggNOG-mapper	1126950.G9J1S7_9CAUD	NA	NA
UHGV-0065178_35	KOfam	K04069	pflA, pflC, pflE; pyruvate formate lyase activating enzyme [EC:1.97.1.4]	NA
UHGV-0065178_35	UniRef90	UniRef90_A0A7W4HL40	Radical SAM protein	NA
UHGV-0065178_35	eggNOG-mapper	521460.Athe_2518	Radical SAM superfamily	NA
UHGV-0065178_35	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0065178_35	COG	COG1180	Pyruvate-formate lyase-activating enzyme	NA
UHGV-0065178_36	PHROG	phrog_5063	NA	unknown function
UHGV-0065178_36	UniRef90	UniRef90_A0A7W4HLB3	NA	NA
UHGV-0065178_36	eggNOG-mapper	102129.Lepto7375DRAFT_7256	NA	NA
UHGV-0065178_36	PADLOC	icity0062	Csx16	CRISPR-CAS
UHGV-0065178_36	Pfam	PF08960	STIV B116-like	STIV_B116-like
UHGV-0065178_36	Structural annotation	PF08960	NA	NA
UHGV-0065178_39	PHROG	phrog_98	NA	unknown function
UHGV-0065178_39	UniRef90	UniRef90_A0A7W4HL59	YopX domain-containing protein	NA
UHGV-0065178_39	eggNOG-mapper	552525.B5LPP1_9CAUD	YopX protein	NA
UHGV-0065178_39	Pfam	PF09643	YopX protein	YopX
UHGV-0065178_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0065178_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0065178_41	PHROG	phrog_7338	NA	unknown function
UHGV-0065178_41	UniRef90	UniRef90_A0A7W4EC99	Helix-turn-helix domain-containing protein	NA
UHGV-0065178_41	eggNOG-mapper	1235790.C805_01691	Helix-turn-helix domain	NA
UHGV-0065178_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0065178_41	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0065178_42	PHROG	phrog_585	NA	unknown function
UHGV-0065178_42	UniRef90	UniRef90_UPI001898D58C	NA	NA
UHGV-0065178_42	eggNOG-mapper	1220551.SCHR_00805	NA	NA
UHGV-0065178_42	Pfam	PF10711	NA	DUF2513
UHGV-0065178_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0065178_44	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0065178_44	UniRef90	UniRef90_A0A7W4HMY1	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0065178_44	eggNOG-mapper	1095737.HMPREF1110_1196	AntA/AntB antirepressor	NA
UHGV-0065178_44	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0065178_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0065178_44	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0065178_44	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0065178_46	UniRef90	UniRef90_A0A352P4D0	DNA-binding protein	NA
UHGV-0065178_46	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0065178_46	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0065178_47	UniRef90	UniRef90_A0A133YTS3	HTH cro/C1-type domain-containing protein	NA
UHGV-0065178_47	eggNOG-mapper	1123263.AUKY01000107_gene746	Peptidase S24-like	NA
UHGV-0065178_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065178_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0065178_48	PHROG	phrog_1914	NA	unknown function
UHGV-0065178_48	UniRef90	UniRef90_A0A133YTS0	Peptidase_M78 domain-containing protein	NA
UHGV-0065178_48	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-0065178_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0065178_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0065178_49	PHROG	phrog_1847	NA	unknown function
UHGV-0065178_49	UniRef90	UniRef90_UPI001F2ACF6B	NA	NA
UHGV-0065178_49	eggNOG-mapper	931626.Awo_c04720	T5orf172	NA
UHGV-0065178_49	Pfam	PF13250	NA	DUF4041
UHGV-0065178_49	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0065178_49	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0065178_49	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0065178_51	KOfam	K14059	int; integrase	NA
UHGV-0065178_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0065178_51	UniRef90	UniRef90_UPI001239AFE1	site-specific integrase	NA
UHGV-0065178_51	eggNOG-mapper	393480.FNP_1662	Belongs to the 'phage' integrase family	NA
UHGV-0065178_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0065178_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065178_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0065178_51	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA