UHGV-0065275

Genome information

Genome length 36,281 bps

CDS count 65

Completeness 99.53% (high-quality)

geNomad score 0.9606

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065275
vOTU ID	vOTU-014632
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_81145
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9606
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.88
Jumbo phage	No

Genome content
Genome length	36,281 bps
GC content	39.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.24%
Average CDS length	513.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065275_2	PHROG	phrog_13890	NA	unknown function
UHGV-0065275_2	UniRef90	UniRef90_A0A849XQQ9	NA	NA
UHGV-0065275_2	eggNOG-mapper	411902.CLOBOL_03783	NA	NA
UHGV-0065275_2	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0065275_3	eggNOG-mapper	97139.C824_03109	NA	NA
UHGV-0065275_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0065275_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0065275_4	UniRef90	UniRef90_B0G4E1	DNA-binding helix-turn-helix protein	NA
UHGV-0065275_4	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0065275_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0065275_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0065275_6	PHROG	phrog_13890	NA	unknown function
UHGV-0065275_7	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0065275_7	PHROG	phrog_2649	endolysin	lysis
UHGV-0065275_7	UniRef90	UniRef90_A0A7X5C6M9	Peptidase_M15_4 domain-containing protein	NA
UHGV-0065275_7	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0065275_7	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0065275_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0065275_7	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0065275_8	PHROG	phrog_443	holin	lysis
UHGV-0065275_8	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-0065275_8	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0065275_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0065275_8	Structural annotation	PF16945	NA	NA
UHGV-0065275_9	PHROG	phrog_4105	NA	unknown function
UHGV-0065275_9	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-0065275_10	UniRef90	UniRef90_A0A011UAK9	Antitoxin	NA
UHGV-0065275_11	Structural annotation	PF10618, MF_01370	NA	NA
UHGV-0065275_13	PHROG	phrog_521	tail protein	tail
UHGV-0065275_13	UniRef90	UniRef90_A0A3R6LRW1	NA	NA
UHGV-0065275_13	eggNOG-mapper	397288.C806_00058	NA	NA
UHGV-0065275_13	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0065275_13	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0065275_13	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0065275_14	PHROG	phrog_1608	tail protein	tail
UHGV-0065275_14	UniRef90	UniRef90_A0A3D4RAP0	Baseplate_J domain-containing protein	NA
UHGV-0065275_14	eggNOG-mapper	1408324.JNJK01000006_gene1396	Baseplate J-like protein	NA
UHGV-0065275_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0065275_14	COG	COG3299	NA	NA
UHGV-0065275_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0065275_15	PHROG	phrog_120	baseplate protein	tail
UHGV-0065275_15	UniRef90	UniRef90_A0A3R6GDN3	NA	NA
UHGV-0065275_15	eggNOG-mapper	1408324.JNJK01000006_gene1395	NA	NA
UHGV-0065275_15	Pfam	PF10934	NA	DUF2634
UHGV-0065275_15	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0065275_15	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0065275_16	Structural annotation	PF01957, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0065275_17	PHROG	phrog_400	tail protein	tail
UHGV-0065275_17	UniRef90	UniRef90_A0A6L5XWJ4	NlpC/P60 family protein	NA
UHGV-0065275_17	eggNOG-mapper	1408324.JNJK01000006_gene1393	NLP P60 protein	NA
UHGV-0065275_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0065275_17	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0065275_18	PHROG	phrog_380	endolysin	lysis
UHGV-0065275_18	UniRef90	UniRef90_A0A6N9QEX3	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0065275_18	eggNOG-mapper	1286171.EAL2_c11150	LysM domain	NA
UHGV-0065275_18	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0065275_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0065275_18	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0065275_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0065275_19	UniRef90	UniRef90_UPI001A49476E	phage tail tape measure protein	NA
UHGV-0065275_19	eggNOG-mapper	1408324.JNJK01000006_gene1391	Phage-related minor tail protein	NA
UHGV-0065275_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0065275_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0065275_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0065275_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0065275_20	PHROG	phrog_2722	NA	unknown function
UHGV-0065275_21	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0065275_21	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-0065275_21	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0065275_21	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0065275_21	Structural annotation	PF08890	NA	NA
UHGV-0065275_22	PHROG	phrog_365	tail protein	tail
UHGV-0065275_22	UniRef90	UniRef90_A0A1C6J560	Phage-like element PBSX protein xkdM	NA
UHGV-0065275_22	eggNOG-mapper	1408324.JNJK01000006_gene1388	Phage tail tube protein	NA
UHGV-0065275_22	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0065275_22	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0065275_23	PHROG	phrog_1480	tail sheath	tail
UHGV-0065275_23	UniRef90	UniRef90_A0A3R6K9U3	Phage tail sheath protein	NA
UHGV-0065275_23	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-0065275_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0065275_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0065275_23	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0065275_24	PHROG	phrog_525	NA	unknown function
UHGV-0065275_24	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-0065275_24	Pfam	PF20765	NA	DUF6838
UHGV-0065275_24	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0065275_25	UniRef90	UniRef90_A0A3R6JLV1	HK97 gp10 family phage protein	NA
UHGV-0065275_25	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0065275_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0065275_26	PHROG	phrog_25	head closure Hc1	connector
UHGV-0065275_26	UniRef90	UniRef90_A0A3R6GCF7	Head-tail adaptor protein	NA
UHGV-0065275_26	eggNOG-mapper	397288.C806_00071	Phage head-tail joining protein	NA
UHGV-0065275_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0065275_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0065275_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0065275_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0065275_27	UniRef90	UniRef90_A0A3R6IUJ7	Phage gp6-like head-tail connector protein	NA
UHGV-0065275_27	eggNOG-mapper	397288.C806_00072	Phage gp6-like head-tail connector protein	NA
UHGV-0065275_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0065275_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0065275_28	PHROG	phrog_6865	NA	unknown function
UHGV-0065275_28	Structural annotation	PF01281	NA	NA
UHGV-0065275_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0065275_29	UniRef90	UniRef90_A0A0F0C801	Phage capsid family protein	NA
UHGV-0065275_29	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0065275_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0065275_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0065275_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0065275_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0065275_30	KOfam	K06904	NA	NA
UHGV-0065275_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0065275_30	UniRef90	UniRef90_UPI0018985D9B	HK97 family phage prohead protease	NA
UHGV-0065275_30	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-0065275_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0065275_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0065275_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0065275_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0065275_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0065275_31	UniRef90	UniRef90_R9J0J7	HK97 family phage portal protein	NA
UHGV-0065275_31	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0065275_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0065275_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0065275_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0065275_31	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0065275_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0065275_32	UniRef90	UniRef90_A0A3R6HK66	Terminase	NA
UHGV-0065275_32	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0065275_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0065275_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0065275_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0065275_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0065275_33	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0065275_33	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0065275_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0065275_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065275_34	UniRef90	UniRef90_UPI001A39C1C2	HNH endonuclease	NA
UHGV-0065275_34	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-0065275_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0065275_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0065275_35	PHROG	phrog_216	integrase	integration and excision
UHGV-0065275_35	UniRef90	UniRef90_A0A1Q9J4X9	Integrase	NA
UHGV-0065275_35	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0065275_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065275_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0065275_35	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0065275_36	KOfam	K14059	int; integrase	NA
UHGV-0065275_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0065275_36	UniRef90	UniRef90_A0A3D5WHH6	Site-specific integrase	NA
UHGV-0065275_36	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0065275_36	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0065275_36	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0065275_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065275_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0065275_36	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0065275_37	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0065275_37	UniRef90	UniRef90_A0A415ZGU9	Helix-turn-helix domain-containing protein	NA
UHGV-0065275_37	eggNOG-mapper	411483.FAEPRAA2165_01502	Excisionase from transposon Tn916	NA
UHGV-0065275_37	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0065275_37	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-0065275_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065275_40	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-0065275_40	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-0065275_42	PHROG	phrog_20593	NA	unknown function
UHGV-0065275_42	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0065275_44	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065275_44	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0065275_44	eggNOG-mapper	1235793.C809_01910	NA	NA
UHGV-0065275_45	PHROG	phrog_8684	NA	unknown function
UHGV-0065275_45	UniRef90	UniRef90_A0A3D5WQK7	YopX domain-containing protein	NA
UHGV-0065275_45	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0065275_45	Pfam	PF09643	YopX protein	YopX
UHGV-0065275_45	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0065275_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0065275_46	PHROG	phrog_7711	NA	unknown function
UHGV-0065275_46	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0065275_46	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0065275_47	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0065275_49	PHROG	phrog_2600	NA	unknown function
UHGV-0065275_49	eggNOG-mapper	742740.HMPREF9474_03130	NA	NA
UHGV-0065275_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0065275_50	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0065275_50	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0065275_50	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-0065275_50	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0065275_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0065275_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0065275_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0065275_52	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0065275_52	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0065275_52	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0065275_52	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0065275_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0065275_52	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0065275_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0065275_55	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0065275_55	UniRef90	UniRef90_A0A174JL72	NA	NA
UHGV-0065275_55	eggNOG-mapper	1232453.BAIF02000057_gene1144	NA	NA
UHGV-0065275_55	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0065275_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0065275_55	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0065275_56	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065275_56	UniRef90	UniRef90_A0A373MZQ3	NA	NA
UHGV-0065275_56	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0065275_56	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0065275_56	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0065275_56	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0065275_63	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0065275_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065275_63	UniRef90	UniRef90_UPI0015702B9F	helix-turn-helix domain-containing protein	NA
UHGV-0065275_63	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065275_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0065275_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065275_63	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0065275_65	eggNOG-mapper	1235835.C814_03388	NA	NA