UHGV-0065299

Genome information

Genome length 30,351 bps

CDS count 53

Completeness 90.85% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065299
vOTU ID	vOTU-078319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_74804
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.04
Jumbo phage	No

Genome content
Genome length	30,351 bps
GC content	41.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.40%
Average CDS length	539.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065299_1	Structural annotation	NF012201	NA	NA
UHGV-0065299_5	PHROG	phrog_19280	NA	unknown function
UHGV-0065299_5	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0065299_6	PHROG	phrog_13289	tail protein	tail
UHGV-0065299_6	UniRef90	UniRef90_R6ERY2	Phage minor structural protein N-terminal region	NA
UHGV-0065299_6	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0065299_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0065299_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0065299_6	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0065299_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0065299_7	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0065299_7	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0065299_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0065299_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0065299_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0065299_8	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0065299_8	PHROG	phrog_23464	NA	unknown function
UHGV-0065299_8	UniRef90	UniRef90_UPI001C12009F	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0065299_8	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0065299_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0065299_10	PHROG	phrog_2115	tail protein	tail
UHGV-0065299_10	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0065299_10	Structural annotation	PF11836	NA	NA
UHGV-0065299_11	PHROG	phrog_88	major tail protein	tail
UHGV-0065299_11	UniRef90	UniRef90_R6ERX7	Phi13 family phage major tail protein	NA
UHGV-0065299_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0065299_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0065299_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0065299_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0065299_12	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0065299_12	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-0065299_12	Structural annotation	TIGR01725	NA	NA
UHGV-0065299_13	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0065299_13	Structural annotation	PF05657	NA	NA
UHGV-0065299_14	PHROG	phrog_19734	NA	unknown function
UHGV-0065299_14	UniRef90	UniRef90_R6ETV7	Putative phage head-tail adaptor	NA
UHGV-0065299_14	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0065299_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0065299_15	PHROG	phrog_2550	NA	unknown function
UHGV-0065299_15	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0065299_15	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0065299_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0065299_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0065299_16	UniRef90	UniRef90_R6ERX1	Phage capsid protein	NA
UHGV-0065299_16	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0065299_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0065299_16	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0065299_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0065299_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0065299_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0065299_17	KOfam	K06904	NA	NA
UHGV-0065299_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0065299_17	UniRef90	UniRef90_UPI0008716C68	HK97 family phage prohead protease	NA
UHGV-0065299_17	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0065299_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0065299_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0065299_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0065299_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0065299_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0065299_18	UniRef90	UniRef90_R6FMT3	HK97 family phage portal protein	NA
UHGV-0065299_18	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0065299_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0065299_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0065299_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0065299_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0065299_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0065299_19	UniRef90	UniRef90_R6F310	Phage terminase large subunit	NA
UHGV-0065299_19	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0065299_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0065299_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0065299_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0065299_19	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0065299_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0065299_20	UniRef90	UniRef90_R6ETV2	Phage terminase small subunit P27 family	NA
UHGV-0065299_20	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-0065299_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0065299_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0065299_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065299_23	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0065299_23	eggNOG-mapper	702437.HMPREF9432_00895	sigma factor activity	NA
UHGV-0065299_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0065299_23	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0065299_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0065299_24	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0065299_24	eggNOG-mapper	936375.HMPREF1152_1066	NA	NA
UHGV-0065299_24	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0065299_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0065299_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065299_25	UniRef90	UniRef90_R5R752	HTH-type transcriptional regulator AnsR family protein	NA
UHGV-0065299_25	eggNOG-mapper	1235793.C809_01899	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065299_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065299_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0065299_25	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0065299_26	UniRef90	UniRef90_R5R073	HTH cro/C1-type domain-containing protein	NA
UHGV-0065299_26	eggNOG-mapper	1048834.TC41_2516	Helix-turn-helix domain	NA
UHGV-0065299_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065299_26	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0065299_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0065299_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0065299_27	UniRef90	UniRef90_A0A1Y4QVJ7	MazG domain-containing protein	NA
UHGV-0065299_27	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0065299_30	PHROG	phrog_5781	NA	unknown function
UHGV-0065299_30	UniRef90	UniRef90_UPI00067F1FCC	NA	NA
UHGV-0065299_30	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0065299_30	Pfam	PF14359	NA	DUF4406
UHGV-0065299_30	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0065299_31	PHROG	phrog_22292	NA	unknown function
UHGV-0065299_32	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0065299_32	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0065299_32	UniRef90	UniRef90_UPI000E09A8FA	MT-A70 family methyltransferase	NA
UHGV-0065299_32	eggNOG-mapper	742740.HMPREF9474_03058	Belongs to the MT-A70-like family	NA
UHGV-0065299_32	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0065299_32	Pfam	PF05063	MT-A70	MT-A70
UHGV-0065299_32	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0065299_32	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0065299_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0065299_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0065299_33	UniRef90	UniRef90_A0A3A8RHV5	Cytosine-specific methyltransferase	NA
UHGV-0065299_33	eggNOG-mapper	1196322.A370_02942	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0065299_33	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0065299_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0065299_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0065299_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0065299_33	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0065299_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065299_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065299_35	UniRef90	UniRef90_A0A845QI71	Single-stranded DNA-binding protein	NA
UHGV-0065299_35	eggNOG-mapper	888727.HMPREF9092_0557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0065299_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065299_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0065299_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065299_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0065299_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0065299_36	PHROG	phrog_24368	NA	unknown function
UHGV-0065299_36	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0065299_38	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0065299_38	PHROG	phrog_32437	NA	unknown function
UHGV-0065299_38	UniRef90	UniRef90_R6ETT3	Transglycosylase SLT domain protein	NA
UHGV-0065299_38	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-0065299_38	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0065299_38	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0065299_38	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0065299_40	PHROG	phrog_9562	NA	unknown function
UHGV-0065299_40	UniRef90	UniRef90_A0A1C5W9L2	Type III effector pipB2	NA
UHGV-0065299_40	eggNOG-mapper	272563.CD630_29960	Pentapeptide repeat protein	NA
UHGV-0065299_40	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0065299_40	Pfam	PF19062	NA	DUF5758
UHGV-0065299_40	COG	COG1357	NA	NA
UHGV-0065299_40	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0065299_44	PHROG	phrog_7566	NA	unknown function
UHGV-0065299_44	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0065299_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065299_46	UniRef90	UniRef90_A0A2V2C1F0	XRE family transcriptional regulator	NA
UHGV-0065299_46	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065299_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0065299_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065299_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0065299_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065299_52	UniRef90	UniRef90_UPI000A3301B9	helix-turn-helix domain-containing protein	NA
UHGV-0065299_52	eggNOG-mapper	903814.ELI_4515	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065299_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065299_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0065299_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0065299_53	UniRef90	UniRef90_UPI0004162303	recombinase family protein	NA
UHGV-0065299_53	eggNOG-mapper	1120998.AUFC01000013_gene2937	NA	NA
UHGV-0065299_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0065299_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0065299_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0065299_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0065299_53	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA