UHGV-0065425

Genome information

Genome length 36,070 bps

CDS count 53

Completeness 92.43% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065425
vOTU ID	vOTU-014642
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_87303
BioSample	SAMEA2338771
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.91
Jumbo phage	No

Genome content
Genome length	36,070 bps
GC content	40.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.89%
Average CDS length	627.51 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065425_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0065425_1	PHROG	phrog_2742	endolysin	lysis
UHGV-0065425_1	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-0065425_1	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0065425_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0065425_1	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0065425_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0065425_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG5492, COG0860	NA	NA
UHGV-0065425_2	PHROG	phrog_443	holin	lysis
UHGV-0065425_2	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0065425_2	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-0065425_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0065425_2	Structural annotation	PF16945	NA	NA
UHGV-0065425_3	PHROG	phrog_4105	NA	unknown function
UHGV-0065425_3	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0065425_4	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0065425_4	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0065425_4	UniRef90	UniRef90_UPI00156E217C	Ig-like domain-containing protein	NA
UHGV-0065425_4	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0065425_4	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0065425_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0065425_4	Structural annotation	PF10651	NA	NA
UHGV-0065425_5	PHROG	phrog_19695	NA	unknown function
UHGV-0065425_5	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0065425_5	Structural annotation	PF19714	NA	NA
UHGV-0065425_6	PHROG	phrog_9994	NA	unknown function
UHGV-0065425_6	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0065425_6	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0065425_6	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0065425_6	Structural annotation	PF20747	NA	NA
UHGV-0065425_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0065425_7	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0065425_7	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0065425_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0065425_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0065425_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0065425_8	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0065425_8	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0065425_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0065425_9	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0065425_9	UniRef90	UniRef90_UPI0015705DAC	phage tail tape measure protein	NA
UHGV-0065425_9	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0065425_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0065425_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0065425_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0065425_10	PHROG	phrog_1021	NA	unknown function
UHGV-0065425_10	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0065425_11	PHROG	phrog_885	major tail protein	tail
UHGV-0065425_11	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0065425_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0065425_12	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0065425_12	Structural annotation	PF12691	NA	NA
UHGV-0065425_13	UniRef90	UniRef90_UPI00156E66A4	HK97 gp10 family phage protein	NA
UHGV-0065425_13	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0065425_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0065425_14	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0065425_14	UniRef90	UniRef90_UPI00156FFBE5	head-tail adaptor protein	NA
UHGV-0065425_14	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0065425_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0065425_15	PHROG	phrog_1236	head protein	head and packaging
UHGV-0065425_15	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-0065425_15	Structural annotation	PF05135	NA	NA
UHGV-0065425_17	PHROG	phrog_212	major head protein	head and packaging
UHGV-0065425_17	UniRef90	UniRef90_UPI001570F689	phage capsid protein	NA
UHGV-0065425_17	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0065425_17	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0065425_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0065425_18	UniRef90	UniRef90_UPI00156E5EEA	phage scaffolding protein	NA
UHGV-0065425_18	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0065425_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0065425_18	Structural annotation	PF06810	NA	NA
UHGV-0065425_19	PHROG	phrog_34731	NA	unknown function
UHGV-0065425_19	eggNOG-mapper	365659.smi_0098	Cysteine-rich CPCC	NA
UHGV-0065425_19	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0065425_20	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0065425_20	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-0065425_20	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0065425_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0065425_20	Pfam	PF21814	NA	DUF6883
UHGV-0065425_20	COG	COG2369	NA	NA
UHGV-0065425_20	Structural annotation	PF21814, PF06152, TIGR01641, COG2369	NA	NA
UHGV-0065425_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0065425_21	UniRef90	UniRef90_UPI00157076FC	phage portal protein	NA
UHGV-0065425_21	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0065425_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0065425_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0065425_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0065425_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0065425_22	UniRef90	UniRef90_UPI00191E59EB	PBSX family phage terminase large subunit	NA
UHGV-0065425_22	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0065425_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0065425_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0065425_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0065425_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0065425_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0065425_23	PHROG	phrog_1233	NA	unknown function
UHGV-0065425_23	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0065425_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0065425_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0065425_24	UniRef90	UniRef90_UPI00191E69A6	terminase small subunit	NA
UHGV-0065425_24	eggNOG-mapper	887325.HMPREF0381_0088	Terminase small subunit	NA
UHGV-0065425_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0065425_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0065425_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0065425_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065425_26	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0065425_26	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0065425_26	Pfam	PF07374	NA	DUF1492
UHGV-0065425_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0065425_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0065425_27	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0065425_27	UniRef90	UniRef90_UPI00156E5B7D	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0065425_27	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0065425_27	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0065425_27	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0065425_28	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0065425_28	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0065425_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065425_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065425_30	UniRef90	UniRef90_UPI00156F1EC1	single-stranded DNA-binding protein	NA
UHGV-0065425_30	eggNOG-mapper	397288.C806_00453	Single-strand binding protein family	NA
UHGV-0065425_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065425_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0065425_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065425_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0065425_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0065425_31	PHROG	phrog_4433	NA	unknown function
UHGV-0065425_31	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0065425_31	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0065425_32	PHROG	phrog_1029	NA	unknown function
UHGV-0065425_32	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0065425_32	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0065425_32	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0065425_33	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0065425_33	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0065425_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0065425_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0065425_34	UniRef90	UniRef90_UPI00156E98BD	recombinase RecT	NA
UHGV-0065425_34	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0065425_34	Pfam	PF03837	RecT family	RecT
UHGV-0065425_34	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0065425_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0065425_34	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0065425_35	PHROG	phrog_674	NA	unknown function
UHGV-0065425_35	UniRef90	UniRef90_UPI0015706E94	NA	NA
UHGV-0065425_35	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0065425_35	Pfam	PF07083	NA	DUF1351
UHGV-0065425_35	Structural annotation	PF07083	NA	NA
UHGV-0065425_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065425_36	UniRef90	UniRef90_UPI00157031BA	YqaJ viral recombinase family protein	NA
UHGV-0065425_36	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0065425_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0065425_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0065425_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0065425_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0065425_40	UniRef90	UniRef90_A0A6L8RW85	NA	NA
UHGV-0065425_40	Structural annotation	PF20037	NA	NA
UHGV-0065425_42	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-0065425_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0065425_44	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0065425_44	UniRef90	UniRef90_A0A564SBT3	Phage antirepressor protein KilAC domain protein	NA
UHGV-0065425_44	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0065425_44	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0065425_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0065425_44	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0065425_44	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0065425_46	PHROG	phrog_32192	NA	unknown function
UHGV-0065425_46	eggNOG-mapper	1280698.AUJS01000007_gene1007	NA	NA
UHGV-0065425_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0065425_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065425_48	UniRef90	UniRef90_UPI00156FE30C	helix-turn-helix transcriptional regulator	NA
UHGV-0065425_48	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065425_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065425_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065425_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0065425_50	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0065425_50	UniRef90	UniRef90_UPI00156E6C7A	helix-turn-helix domain-containing protein	NA
UHGV-0065425_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065425_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065425_51	UniRef90	UniRef90_A0A0D1BYU2	SAP domain-containing protein	NA
UHGV-0065425_51	eggNOG-mapper	1304866.K413DRAFT_1250	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0065425_51	Pfam	PF02037	SAP domain	SAP
UHGV-0065425_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0065425_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0065425_52	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0065425_52	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0065425_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0065425_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0065425_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0065425_52	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0065425_53	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-0065425_53	PHROG	phrog_28844	NA	unknown function
UHGV-0065425_53	UniRef90	UniRef90_A0A174EJ10	ABC transporter substrate-binding protein	NA
UHGV-0065425_53	eggNOG-mapper	411462.DORLON_01446	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	NA
UHGV-0065425_53	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0065425_53	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA