UHGV-0065492

Genome information

Genome length 41,537 bps

CDS count 76

Completeness 98.59% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065492
vOTU ID	vOTU-010360
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_95563
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46
Jumbo phage	No

Genome content
Genome length	41,537 bps
GC content	38.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	88.67%
Average CDS length	488.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065492_1	PHROG	phrog_13879	NA	unknown function
UHGV-0065492_1	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0065492_2	PHROG	phrog_1194	NA	unknown function
UHGV-0065492_2	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0065492_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0065492_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0065492_3	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0065492_3	COG	COG5283	Phage-related tail protein	NA
UHGV-0065492_4	PHROG	phrog_706	NA	unknown function
UHGV-0065492_4	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0065492_4	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0065492_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0065492_4	Structural annotation	PF06854	NA	NA
UHGV-0065492_5	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0065492_5	Structural annotation	PF10666	NA	NA
UHGV-0065492_6	PHROG	phrog_3099	NA	unknown function
UHGV-0065492_6	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0065492_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0065492_7	Structural annotation	PF12691	NA	NA
UHGV-0065492_8	PHROG	phrog_3366	NA	unknown function
UHGV-0065492_8	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0065492_8	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0065492_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0065492_9	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0065492_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0065492_10	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0065492_10	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0065492_10	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0065492_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0065492_11	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0065492_11	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0065492_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0065492_13	PHROG	phrog_1233	NA	unknown function
UHGV-0065492_13	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0065492_13	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0065492_14	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0065492_15	PHROG	phrog_20016	NA	unknown function
UHGV-0065492_15	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0065492_15	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0065492_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0065492_16	PHROG	phrog_16490	NA	unknown function
UHGV-0065492_16	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0065492_17	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0065492_18	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0065492_19	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0065492_19	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0065492_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0065492_20	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0065492_20	eggNOG-mapper	936375.HMPREF1152_1071	NA	NA
UHGV-0065492_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0065492_20	COG	COG2369	NA	NA
UHGV-0065492_20	Structural annotation	PF06152	NA	NA
UHGV-0065492_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0065492_21	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0065492_21	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0065492_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0065492_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0065492_23	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0065492_23	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0065492_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0065492_25	PHROG	phrog_1233	NA	unknown function
UHGV-0065492_25	UniRef90	UniRef90_UPI001D077F84	basic secretory family protein	NA
UHGV-0065492_25	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0065492_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0065492_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0065492_27	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0065492_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0065492_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0065492_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0065492_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0065492_27	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0065492_28	PHROG	phrog_33130	NA	unknown function
UHGV-0065492_28	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0065492_28	Structural annotation	PF10922	NA	NA
UHGV-0065492_29	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065492_29	UniRef90	UniRef90_A0A4Q2LHE8	GLYCOSYL_HYDROL_F22_1 domain-containing protein	NA
UHGV-0065492_29	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0065492_33	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0065492_33	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0065492_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0065492_33	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0065492_35	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0065492_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0065492_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0065492_39	UniRef90	UniRef90_A0A1Q6KUL6	PAPS_reduct domain-containing protein	NA
UHGV-0065492_39	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0065492_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0065492_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0065492_39	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0065492_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0065492_40	PHROG	phrog_29443	NA	unknown function
UHGV-0065492_40	UniRef90	UniRef90_UPI0007368DA0	DNA cytosine methyltransferase	NA
UHGV-0065492_40	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0065492_40	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0065492_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0065492_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0065492_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0065492_42	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0065492_42	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0065492_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0065492_42	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0065492_45	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0065492_46	PHROG	phrog_8684	NA	unknown function
UHGV-0065492_46	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0065492_46	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0065492_46	Pfam	PF09643	YopX protein	YopX
UHGV-0065492_46	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0065492_46	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0065492_47	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0065492_48	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0065492_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065492_49	PHROG	phrog_10455	NA	unknown function
UHGV-0065492_49	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0065492_52	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0065492_52	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0065492_52	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0065492_52	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0065492_52	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0065492_52	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0065492_52	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0065492_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0065492_53	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0065492_53	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0065492_53	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0065492_53	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0065492_54	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0065492_54	UniRef90	UniRef90_UPI0018A6ABED	Rha family transcriptional regulator	NA
UHGV-0065492_54	eggNOG-mapper	536232.CLM_1619	ORF6C domain	NA
UHGV-0065492_54	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0065492_54	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0065492_54	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0065492_54	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0065492_54	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0065492_55	PHROG	phrog_398	NA	unknown function
UHGV-0065492_55	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0065492_55	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0065492_55	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0065492_55	Structural annotation	PF16784	NA	NA
UHGV-0065492_56	PHROG	phrog_14970	NA	unknown function
UHGV-0065492_56	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0065492_56	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0065492_56	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0065492_56	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0065492_56	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0065492_57	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0065492_57	PHROG	phrog_5889	NA	unknown function
UHGV-0065492_57	UniRef90	UniRef90_A0A3R5ZBU3	HD family phosphohydrolase	NA
UHGV-0065492_57	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0065492_57	Pfam	PF01966	HD domain	HD
UHGV-0065492_57	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0065492_57	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0065492_59	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0065492_61	Structural annotation	PF11127	NA	NA
UHGV-0065492_66	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0065492_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065492_66	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0065492_66	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0065492_66	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0065492_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065492_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065492_66	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0065492_68	PHROG	phrog_14275	NA	unknown function
UHGV-0065492_68	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0065492_68	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0065492_68	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0065492_68	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0065492_69	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0065492_69	PHROG	phrog_95	integrase	integration and excision
UHGV-0065492_69	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0065492_69	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0065492_69	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0065492_69	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0065492_69	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0065492_69	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0065492_70	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0065492_70	PHROG	phrog_435	endolysin	lysis
UHGV-0065492_70	UniRef90	UniRef90_A0A1Q6KUK5	SPOR domain-containing protein	NA
UHGV-0065492_70	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-0065492_70	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0065492_70	Pfam	PF05036	SPOR domain	SPOR
UHGV-0065492_70	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0065492_70	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0065492_71	PHROG	phrog_1129	holin	lysis
UHGV-0065492_71	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0065492_71	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0065492_71	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0065492_71	Structural annotation	PF06946	NA	NA
UHGV-0065492_72	PHROG	phrog_4105	NA	unknown function
UHGV-0065492_72	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0065492_73	Structural annotation	PF00386	NA	NA
UHGV-0065492_74	PHROG	phrog_18725	NA	unknown function
UHGV-0065492_76	PHROG	phrog_13879	NA	unknown function
UHGV-0065492_76	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA