UHGV-0065501

Genome information

Genome length 44,517 bps

CDS count 71

Completeness 98.90% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065501
vOTU ID	vOTU-070166
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_95583
BioSample	SAMEA2466918
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.45
Jumbo phage	No

Genome content
Genome length	44,517 bps
GC content	41.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.54%
Average CDS length	577.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065501_1	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0065501_1	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0065501_1	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0065501_1	Pfam	PF06048	NA	DUF927
UHGV-0065501_1	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0065501_1	COG	COG5519	NA	NA
UHGV-0065501_1	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0065501_2	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0065501_2	PHROG	phrog_11992	NA	unknown function
UHGV-0065501_2	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0065501_2	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0065501_2	PADLOC	drt-UG29	DRT	DRT
UHGV-0065501_2	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0065501_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0065501_2	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0065501_3	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0065501_3	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0065501_3	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0065501_3	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0065501_3	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0065501_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065501_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065501_4	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0065501_4	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0065501_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065501_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0065501_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065501_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0065501_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0065501_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0065501_5	UniRef90	UniRef90_A0A414X367	Single-stranded DNA-binding protein	NA
UHGV-0065501_5	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0065501_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0065501_5	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0065501_6	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0065501_7	eggNOG-mapper	1235798.C817_05064	NA	NA
UHGV-0065501_8	Structural annotation	NF011879	NA	NA
UHGV-0065501_13	PHROG	phrog_6058	NA	unknown function
UHGV-0065501_13	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0065501_13	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0065501_16	PHROG	phrog_12206	NA	unknown function
UHGV-0065501_16	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0065501_17	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0065501_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065501_17	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0065501_17	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0065501_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0065501_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0065501_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065501_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0065501_19	UniRef90	UniRef90_A0A3A6GQZ1	Zinc ribbon domain-containing protein	NA
UHGV-0065501_19	COG	COG2314	NA	NA
UHGV-0065501_20	KOfam	K14059	int; integrase	NA
UHGV-0065501_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0065501_20	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0065501_20	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0065501_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065501_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0065501_20	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0065501_21	PHROG	phrog_14030	NA	unknown function
UHGV-0065501_21	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-0065501_21	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0065501_21	Pfam	PF05257	CHAP domain	CHAP
UHGV-0065501_21	COG	COG3942	Surface antigen	NA
UHGV-0065501_21	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0065501_22	Structural annotation	NF040910	NA	NA
UHGV-0065501_24	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0065501_24	PHROG	phrog_819	tail protein	tail
UHGV-0065501_24	UniRef90	UniRef90_A0A416SLH3	Collagen-like protein	NA
UHGV-0065501_24	eggNOG-mapper	1508644.SFBmNL_00815	NA	NA
UHGV-0065501_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0065501_24	Pfam	PF19789	NA	DUF6273
UHGV-0065501_24	Structural annotation	PF19789, PF16323, COG2033	NA	NA
UHGV-0065501_25	PHROG	phrog_18444	NA	unknown function
UHGV-0065501_26	PHROG	phrog_6616	tail protein	tail
UHGV-0065501_26	UniRef90	UniRef90_UPI0018978488	tail fiber domain-containing protein	NA
UHGV-0065501_26	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0065501_26	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0065501_27	PHROG	phrog_1194	NA	unknown function
UHGV-0065501_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0065501_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0065501_28	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0065501_28	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0065501_28	COG	COG1511	NA	NA
UHGV-0065501_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0065501_29	PHROG	phrog_706	NA	unknown function
UHGV-0065501_29	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0065501_29	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0065501_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0065501_29	Structural annotation	PF06854	NA	NA
UHGV-0065501_30	PHROG	phrog_11299	NA	unknown function
UHGV-0065501_30	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0065501_30	Structural annotation	PF10666	NA	NA
UHGV-0065501_31	PHROG	phrog_3099	NA	unknown function
UHGV-0065501_31	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0065501_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0065501_32	PHROG	phrog_3266	tail completion	connector
UHGV-0065501_32	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0065501_32	Structural annotation	PF12691	NA	NA
UHGV-0065501_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0065501_33	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0065501_33	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0065501_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0065501_33	Structural annotation	PF11114	NA	NA
UHGV-0065501_34	PHROG	phrog_3366	NA	unknown function
UHGV-0065501_34	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0065501_34	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0065501_35	PHROG	phrog_1129	holin	lysis
UHGV-0065501_35	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0065501_35	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0065501_35	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0065501_35	Structural annotation	PF06946	NA	NA
UHGV-0065501_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0065501_37	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0065501_38	PHROG	phrog_544	major head protein	head and packaging
UHGV-0065501_38	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0065501_38	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0065501_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0065501_38	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0065501_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0065501_39	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0065501_39	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0065501_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0065501_40	PHROG	phrog_28802	NA	unknown function
UHGV-0065501_40	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0065501_41	PHROG	phrog_20016	NA	unknown function
UHGV-0065501_41	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0065501_41	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0065501_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0065501_42	PHROG	phrog_16490	NA	unknown function
UHGV-0065501_42	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0065501_43	PHROG	phrog_22984	NA	unknown function
UHGV-0065501_44	PHROG	phrog_21718	NA	unknown function
UHGV-0065501_44	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0065501_45	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0065501_47	PHROG	phrog_25567	NA	unknown function
UHGV-0065501_47	UniRef90	UniRef90_A0A416SH94	Helix-turn-helix domain-containing protein	NA
UHGV-0065501_47	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065501_47	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0065501_47	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0065501_48	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0065501_48	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0065501_49	PHROG	phrog_3754	NA	unknown function
UHGV-0065501_49	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0065501_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0065501_50	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0065501_50	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0065501_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0065501_50	COG	COG2369	NA	NA
UHGV-0065501_50	Structural annotation	PF06152	NA	NA
UHGV-0065501_51	PHROG	phrog_28526	NA	unknown function
UHGV-0065501_51	UniRef90	UniRef90_A0A3D4R9W1	Antitoxin	NA
UHGV-0065501_51	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0065501_54	PHROG	phrog_533	portal protein	head and packaging
UHGV-0065501_54	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0065501_54	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0065501_54	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0065501_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0065501_55	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0065501_55	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0065501_55	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0065501_55	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0065501_55	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0065501_55	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0065501_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0065501_55	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0065501_58	PHROG	phrog_2776	NA	unknown function
UHGV-0065501_58	eggNOG-mapper	1298920.KI911353_gene2703	NA	NA
UHGV-0065501_58	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0065501_59	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0065501_60	PHROG	phrog_8684	NA	unknown function
UHGV-0065501_60	UniRef90	UniRef90_A0A3A6GQT2	YopX domain-containing protein	NA
UHGV-0065501_60	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0065501_60	Pfam	PF09643	YopX protein	YopX
UHGV-0065501_60	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0065501_61	PHROG	phrog_20593	NA	unknown function
UHGV-0065501_63	UniRef90	UniRef90_UPI001898116D	NA	NA
UHGV-0065501_63	Pfam	PF04448	NA	DUF551
UHGV-0065501_63	Structural annotation	PF04448	NA	NA
UHGV-0065501_64	PHROG	phrog_419	NA	unknown function
UHGV-0065501_64	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0065501_64	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0065501_65	Structural annotation	PF17888	NA	NA
UHGV-0065501_67	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0065501_67	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0065501_67	UniRef90	UniRef90_UPI000CF96674	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0065501_67	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0065501_67	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0065501_67	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0065501_67	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0065501_67	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0065501_70	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0065501_70	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0065501_70	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0065501_70	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0065501_71	Structural annotation	NF010187	NA	NA