UHGV-0065675

Genome information

Genome length 45,815 bps

CDS count 67

Completeness 85.25% (medium-quality)

geNomad score 0.9518

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065675
vOTU ID	vOTU-036269
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_73462
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9518
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.44
Jumbo phage	No

Genome content
Genome length	45,815 bps
GC content	30.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	87.60%
Average CDS length	600.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065675_3	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0065675_3	eggNOG-mapper	1121468.AUBR01000044_gene1833	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0065675_3	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0065675_3	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0065675_4	PHROG	phrog_98	NA	unknown function
UHGV-0065675_4	UniRef90	UniRef90_A0A140PT62	YopX domain-containing protein	NA
UHGV-0065675_4	eggNOG-mapper	457405.FSDG_01550	YopX protein	NA
UHGV-0065675_4	Pfam	PF09643	YopX protein	YopX
UHGV-0065675_4	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0065675_9	Pfam	PF12116	Stage III sporulation protein D	SpoIIID
UHGV-0065675_10	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0065675_10	UniRef90	UniRef90_UPI001A9BE9CE	phage terminase large subunit	NA
UHGV-0065675_10	eggNOG-mapper	1095747.HMPREF1049_1834	TIGRFAM Phage	NA
UHGV-0065675_10	COG	COG5410	NA	NA
UHGV-0065675_10	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0065675_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0065675_11	UniRef90	UniRef90_UPI001BAAB616	phage portal protein	NA
UHGV-0065675_11	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0065675_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0065675_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0065675_13	PHROG	phrog_909	major head protein	head and packaging
UHGV-0065675_13	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0065675_13	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0065675_13	Structural annotation	PF02924	NA	NA
UHGV-0065675_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-0065675_14	UniRef90	UniRef90_A0A7Z0TB80	Major capsid protein	NA
UHGV-0065675_14	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0065675_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0065675_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0065675_16	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0065675_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0065675_19	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0065675_20	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0065675_23	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-0065675_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0065675_23	UniRef90	UniRef90_A0A1C6GVH2	Phage-related protein	NA
UHGV-0065675_23	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0065675_23	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0065675_23	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0065675_24	PHROG	phrog_1194	NA	unknown function
UHGV-0065675_24	eggNOG-mapper	1305708.M9Q2F8_9CAUD	NA	NA
UHGV-0065675_25	PHROG	phrog_13879	NA	unknown function
UHGV-0065675_25	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0065675_25	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0065675_27	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0065675_28	PHROG	phrog_31538	NA	unknown function
UHGV-0065675_28	eggNOG-mapper	742733.HMPREF9469_05035	NA	NA
UHGV-0065675_29	PHROG	phrog_13589	NA	unknown function
UHGV-0065675_29	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0065675_30	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0065675_37	KOfam	K07813	agrB; accessory gene regulator B	NA
UHGV-0065675_37	Pfam	PF04647	Accessory gene regulator B	AgrB
UHGV-0065675_37	Structural annotation	PF08281, NF001067, COG2739	NA	NA
UHGV-0065675_40	PHROG	phrog_16490	NA	unknown function
UHGV-0065675_40	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0065675_41	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0065675_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0065675_45	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0065675_45	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065675_45	UniRef90	UniRef90_A0A133PK73	AAA_23 domain-containing protein	NA
UHGV-0065675_45	eggNOG-mapper	1111134.HMPREF1253_0401	AAA domain	NA
UHGV-0065675_45	PADLOC	PtuA1_00007	AAA ATPase domain	Septu
UHGV-0065675_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0065675_45	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0065675_46	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0065675_46	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0065675_48	UniRef90	UniRef90_B0N8M1	Recombinase, phage RecT family	NA
UHGV-0065675_49	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0065675_49	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0065675_49	UniRef90	UniRef90_UPI000E66918C	MBL fold metallo-hydrolase	NA
UHGV-0065675_49	eggNOG-mapper	1123401.JHYQ01000029_gene1945	of the beta-lactamase superfamily I	NA
UHGV-0065675_49	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0065675_49	dbAPIS	APIS058	NA	NA
UHGV-0065675_49	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0065675_49	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0065675_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0065675_51	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0065675_51	UniRef90	UniRef90_A0A851IBF4	ERCC4 domain-containing protein	NA
UHGV-0065675_51	eggNOG-mapper	1120998.AUFC01000030_gene2218	NA	NA
UHGV-0065675_51	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0065675_54	UniRef90	UniRef90_A0A2I1K4R5	DNA-binding protein	NA
UHGV-0065675_54	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0065675_55	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0065675_55	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0065675_55	UniRef90	UniRef90_A0A6J5T3G1	COG0863 DNA modification methylase	NA
UHGV-0065675_55	eggNOG-mapper	1064535.MELS_1947	N-4 methylation of cytosine	NA
UHGV-0065675_55	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0065675_55	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0065675_55	COG	COG0863	DNA modification methylase	NA
UHGV-0065675_56	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0065675_56	UniRef90	UniRef90_UPI001D06849A	replisome organizer	NA
UHGV-0065675_56	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-0065675_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0065675_56	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0065675_60	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0065675_65	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0065675_65	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0065675_65	UniRef90	UniRef90_A0A7G6E037	Helix-turn-helix domain-containing protein	NA
UHGV-0065675_65	eggNOG-mapper	1449126.JQKL01000024_gene2337	Resolvase, N terminal domain	NA
UHGV-0065675_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0065675_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0065675_65	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA