UHGV-0065684

Genome information

Genome length 41,869 bps

CDS count 51

Completeness 91.16% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065684
vOTU ID	vOTU-071750
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_68727
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.2
Jumbo phage	No

Genome content
Genome length	41,869 bps
GC content	43.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.81%
Average CDS length	782.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065684_1	Pfam	PF20619	NA	DUF6804
UHGV-0065684_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0065684_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065684_2	UniRef90	UniRef90_B0N8N2	DNA-binding helix-turn-helix protein	NA
UHGV-0065684_2	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065684_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065684_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065684_2	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0065684_3	UniRef90	UniRef90_A0A1H6YG72	Cro/C1-type HTH DNA-binding domain-containing protein	NA
UHGV-0065684_3	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0065684_3	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0065684_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0065684_14	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065684_14	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-0065684_14	eggNOG-mapper	1227454.C446_15733	COG1403 Restriction endonuclease	NA
UHGV-0065684_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0065684_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0065684_16	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0065684_16	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0065684_16	UniRef90	UniRef90_UPI00094EBE41	dUTP diphosphatase	NA
UHGV-0065684_16	eggNOG-mapper	1007103.AFHW01000034_gene2033	dUTPase	NA
UHGV-0065684_16	Pfam	PF00692	dUTPase	dUTPase
UHGV-0065684_16	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0065684_16	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0065684_16	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0065684_17	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0065684_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0065684_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0065684_18	UniRef90	UniRef90_UPI001D2D721E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0065684_18	eggNOG-mapper	469617.FUAG_00816	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0065684_18	PADLOC	SspD_00001	SspD	SSP
UHGV-0065684_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0065684_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0065684_18	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0065684_19	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0065684_19	UniRef90	UniRef90_A0A316S7T7	Radical SAM protein	NA
UHGV-0065684_19	eggNOG-mapper	1235798.C817_05514	NA	NA
UHGV-0065684_19	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0065684_19	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0065684_21	Structural annotation	COG3461	NA	NA
UHGV-0065684_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0065684_25	eggNOG-mapper	1151292.QEW_0318	NA	NA
UHGV-0065684_25	Structural annotation	PF21578	NA	NA
UHGV-0065684_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0065684_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0065684_27	UniRef90	UniRef90_A0A2D3Q2C2	Terminase	NA
UHGV-0065684_27	eggNOG-mapper	585503.HMPREF7545_1730	Terminase small subunit	NA
UHGV-0065684_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0065684_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0065684_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0065684_28	PHROG	phrog_5902	NA	unknown function
UHGV-0065684_28	UniRef90	UniRef90_UPI0018C4A0E6	terminase	NA
UHGV-0065684_28	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0065684_28	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0065684_28	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0065684_30	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0065684_30	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-0065684_30	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-0065684_30	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0065684_30	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0065684_31	PHROG	phrog_528	NA	unknown function
UHGV-0065684_32	PHROG	phrog_458	protease	other
UHGV-0065684_32	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-0065684_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-0065684_33	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-0065684_33	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-0065684_33	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0065684_33	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0065684_34	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-0065684_34	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0065684_35	Structural annotation	PF12949	NA	NA
UHGV-0065684_36	PHROG	phrog_394	tail protein	tail
UHGV-0065684_36	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-0065684_36	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-0065684_36	Structural annotation	PF17212	NA	NA
UHGV-0065684_37	PHROG	phrog_376	tail protein	tail
UHGV-0065684_37	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0065684_37	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-0065684_37	Structural annotation	PF11134, PF13157, MF_03037, TIGR02658, COG4257	NA	NA
UHGV-0065684_38	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0065684_38	UniRef90	UniRef90_Q858G2	Acetyltransferase	NA
UHGV-0065684_38	eggNOG-mapper	215158.Q858G2_BPE15	transferase activity	NA
UHGV-0065684_38	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0065684_38	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0065684_39	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0065684_39	Structural annotation	TIGR02971	NA	NA
UHGV-0065684_40	UniRef90	UniRef90_A0A1B3X2T2	NlpC/P60 domain-containing protein	NA
UHGV-0065684_40	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0065684_40	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0065684_41	PHROG	phrog_9880	NA	unknown function
UHGV-0065684_41	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0065684_41	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0065684_41	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0065684_41	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0065684_42	PHROG	phrog_1640	tail protein	tail
UHGV-0065684_42	eggNOG-mapper	556269.ACDQ01000009_gene1944	Phage Tail Collar Domain	NA
UHGV-0065684_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0065684_43	PHROG	phrog_1807	tail fiber protein	tail
UHGV-0065684_43	Pfam	PF14301	NA	DUF4376
UHGV-0065684_43	Structural annotation	PF14301	NA	NA
UHGV-0065684_44	KOfam	K14059	int; integrase	NA
UHGV-0065684_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0065684_44	UniRef90	UniRef90_A0A641X3J6	Tyrosine-type recombinase/integrase	NA
UHGV-0065684_44	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0065684_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065684_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0065684_44	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0065684_45	PHROG	phrog_199	holin	lysis
UHGV-0065684_45	UniRef90	UniRef90_A0A316S9Q0	Holin	NA
UHGV-0065684_45	eggNOG-mapper	1120985.AUMI01000001_gene2154	Bacteriophage holin family	NA
UHGV-0065684_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0065684_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0065684_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0065684_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0065684_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0065684_46	PHROG	phrog_291	endolysin	lysis
UHGV-0065684_46	UniRef90	UniRef90_A0A316S7T0	Glycosyl hydrolase family 25	NA
UHGV-0065684_46	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0065684_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0065684_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0065684_46	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0065684_47	PHROG	phrog_774	NA	unknown function
UHGV-0065684_47	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0065684_48	PHROG	phrog_9467	NA	unknown function
UHGV-0065684_48	UniRef90	UniRef90_UPI0018C615EF	Gp49 family protein	NA
UHGV-0065684_48	eggNOG-mapper	573061.Clocel_3545	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0065684_48	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0065684_48	dbAPIS	APIS043	NA	NA
UHGV-0065684_48	Structural annotation	PF13876	NA	NA
UHGV-0065684_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0065684_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0065684_51	UniRef90	UniRef90_A0A349YNY9	Recombinase family protein	NA
UHGV-0065684_51	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0065684_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0065684_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0065684_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0065684_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0065684_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA