UHGV-0065827

Genome information

Genome length 30,261 bps

CDS count 45

Completeness 79.96% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065827
vOTU ID	vOTU-016583
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_69699
BioSample	SAMEA2338669
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.6
Jumbo phage	No

Genome content
Genome length	30,261 bps
GC content	50.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.73%
Average CDS length	620.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065827_1	KOfam	K14059	int; integrase	NA
UHGV-0065827_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0065827_1	UniRef90	UniRef90_A0A1V5XHC9	Transposase	NA
UHGV-0065827_1	eggNOG-mapper	429009.Adeg_0419	Belongs to the 'phage' integrase family	NA
UHGV-0065827_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0065827_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065827_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0065827_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0065827_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0065827_3	UniRef90	UniRef90_A0A410PX10	Abi family protein	NA
UHGV-0065827_3	eggNOG-mapper	748224.HMPREF9436_01377	Abi-like protein	NA
UHGV-0065827_3	PADLOC	AbiD	AbiD	Abi
UHGV-0065827_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0065827_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0065827_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0065827_4	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0065827_4	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065827_4	UniRef90	UniRef90_A0A498CRY2	Type I site-specific deoxyribonuclease	NA
UHGV-0065827_4	eggNOG-mapper	1291050.JAGE01000001_gene2948	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0065827_4	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0065827_4	COG	COG4748	NA	NA
UHGV-0065827_4	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0065827_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0065827_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065827_5	UniRef90	UniRef90_A0A8J8M8T6	Helix-turn-helix transcriptional regulator	NA
UHGV-0065827_5	eggNOG-mapper	1292035.H476_1315	Transcriptional	NA
UHGV-0065827_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065827_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065827_5	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0065827_6	UniRef90	UniRef90_UPI001F460385	helix-turn-helix transcriptional regulator	NA
UHGV-0065827_6	eggNOG-mapper	649747.HMPREF0083_05687	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065827_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065827_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0065827_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0065827_10	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0065827_10	UniRef90	UniRef90_A0A1Y4MH12	HTH cro/C1-type domain-containing protein	NA
UHGV-0065827_10	eggNOG-mapper	457412.RSAG_01182	sequence-specific DNA binding	NA
UHGV-0065827_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0065827_10	Structural annotation	PF01381, COG1476	NA	NA
UHGV-0065827_13	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0065827_13	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0065827_13	UniRef90	UniRef90_A0A1M5BDE2	Plasmid segregation protein ParM	NA
UHGV-0065827_13	eggNOG-mapper	1449126.JQKL01000007_gene670	StbA protein	NA
UHGV-0065827_13	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0065827_13	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0065827_13	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0065827_13	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0065827_16	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0065827_16	UniRef90	UniRef90_A0A285G7C4	NA	NA
UHGV-0065827_16	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0065827_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0065827_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0065827_18	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0065827_18	UniRef90	UniRef90_UPI000C7C87D9	NA	NA
UHGV-0065827_18	eggNOG-mapper	1219031.BBJR01000025_gene148	NA	NA
UHGV-0065827_18	Pfam	PF14359	NA	DUF4406
UHGV-0065827_18	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0065827_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065827_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0065827_21	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0065827_21	UniRef90	UniRef90_A0A1Q6KRR3	Methyltransferase	NA
UHGV-0065827_21	eggNOG-mapper	1226322.HMPREF1545_02194	DNA methylase	NA
UHGV-0065827_21	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0065827_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0065827_21	COG	COG0863	DNA modification methylase	NA
UHGV-0065827_21	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0065827_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065827_22	UniRef90	UniRef90_A0A1M6MVE6	HNH endonuclease	NA
UHGV-0065827_22	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0065827_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0065827_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0065827_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0065827_23	UniRef90	UniRef90_A0A0G3WGQ0	Phage terminase, small subunit	NA
UHGV-0065827_23	eggNOG-mapper	926561.KB900623_gene765	NA	NA
UHGV-0065827_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0065827_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0065827_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0065827_24	UniRef90	UniRef90_A0A7X5HXK4	Terminase large subunit	NA
UHGV-0065827_24	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0065827_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0065827_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0065827_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0065827_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0065827_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0065827_25	UniRef90	UniRef90_A0A0D8I7Q3	Phage portal protein, HK97 family	NA
UHGV-0065827_25	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0065827_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0065827_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0065827_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0065827_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0065827_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0065827_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0065827_26	UniRef90	UniRef90_A0A7C6Z5Z9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0065827_26	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0065827_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0065827_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0065827_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0065827_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0065827_27	UniRef90	UniRef90_A0A7X5KPR6	Phage major capsid protein	NA
UHGV-0065827_27	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0065827_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0065827_27	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0065827_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0065827_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0065827_27	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0065827_28	PHROG	phrog_749	NA	unknown function
UHGV-0065827_28	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0065827_29	PHROG	phrog_19734	NA	unknown function
UHGV-0065827_29	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0065827_29	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0065827_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0065827_30	Structural annotation	PF05657	NA	NA
UHGV-0065827_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0065827_31	UniRef90	UniRef90_A4J7Q8	Phage protein, HK97 gp10 family	NA
UHGV-0065827_31	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0065827_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0065827_31	Structural annotation	TIGR01725	NA	NA
UHGV-0065827_32	PHROG	phrog_88	major tail protein	tail
UHGV-0065827_32	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0065827_32	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0065827_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0065827_32	COG	COG5492	NA	NA
UHGV-0065827_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0065827_34	PHROG	phrog_33680	NA	unknown function
UHGV-0065827_34	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0065827_34	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0065827_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0065827_34	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0065827_35	PHROG	phrog_10519	virion structural protein	head and packaging
UHGV-0065827_35	UniRef90	UniRef90_A0A5D4KE05	Fibronectin type-III domain-containing protein	NA
UHGV-0065827_35	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0065827_35	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0065827_36	PHROG	phrog_26795	NA	unknown function
UHGV-0065827_36	eggNOG-mapper	642492.Clole_0754	NA	NA
UHGV-0065827_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0065827_38	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0065827_40	PHROG	phrog_13589	NA	unknown function
UHGV-0065827_40	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0065827_41	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0065827_44	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0065827_45	UniRef90	UniRef90_A0A316RRK6	NlpC/P60 domain-containing protein	NA
UHGV-0065827_45	COG	COG1404	Serine protease, subtilisin family	NA