UHGV-0065917

Genome information

Genome length 23,482 bps

CDS count 39

Completeness 58.50% (medium-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065917
vOTU ID	vOTU-021453
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_88576
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13
Jumbo phage	No

Genome content
Genome length	23,482 bps
GC content	43.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.18%
Average CDS length	557.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065917_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0065917_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065917_2	UniRef90	UniRef90_A0A1H7YGC7	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0065917_2	eggNOG-mapper	1392502.JNIO01000002_gene278	sequence-specific DNA binding	NA
UHGV-0065917_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065917_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0065917_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0065917_3	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-0065917_3	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0065917_3	COG	COG5492	NA	NA
UHGV-0065917_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0065917_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0065917_7	UniRef90	UniRef90_A0A316QGI6	XRE family transcriptional regulator	NA
UHGV-0065917_7	eggNOG-mapper	742738.HMPREF9460_01029	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065917_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065917_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0065917_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0065917_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0065917_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0065917_8	UniRef90	UniRef90_A0A316QDM9	XRE family transcriptional regulator	NA
UHGV-0065917_8	eggNOG-mapper	1029718.SFBM_0097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0065917_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0065917_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0065917_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0065917_13	PHROG	phrog_7713	NA	unknown function
UHGV-0065917_13	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0065917_13	Structural annotation	PF00805	NA	NA
UHGV-0065917_15	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0065917_15	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0065917_15	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0065917_15	Pfam	PF06378	NA	DUF1071
UHGV-0065917_15	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0065917_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0065917_16	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0065917_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0065917_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0065917_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0065917_17	UniRef90	UniRef90_A0A316Q8B3	Single-stranded DNA-binding protein	NA
UHGV-0065917_17	eggNOG-mapper	1304880.JAGB01000003_gene1326	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0065917_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0065917_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0065917_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0065917_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0065917_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0065917_18	PHROG	phrog_2113	NA	unknown function
UHGV-0065917_18	UniRef90	UniRef90_UPI000835921F	helix-turn-helix domain-containing protein	NA
UHGV-0065917_19	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0065917_19	UniRef90	UniRef90_UPI000F4ADF08	phage replication protein	NA
UHGV-0065917_19	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0065917_19	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0065917_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0065917_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0065917_20	UniRef90	UniRef90_UPI00041C45A3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0065917_20	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0065917_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0065917_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0065917_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0065917_22	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0065917_22	UniRef90	UniRef90_A0A7C6JZZ1	DNA cytosine methyltransferase	NA
UHGV-0065917_22	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0065917_22	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0065917_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0065917_23	UniRef90	UniRef90_UPI0009DB8E5F	NA	NA
UHGV-0065917_23	eggNOG-mapper	1410624.JNKK01000051_gene2469	sigma factor activity	NA
UHGV-0065917_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0065917_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0065917_24	PHROG	phrog_1233	NA	unknown function
UHGV-0065917_24	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0065917_25	UniRef90	UniRef90_UPI000B34C540	helix-turn-helix domain-containing protein	NA
UHGV-0065917_25	eggNOG-mapper	1449126.JQKL01000046_gene2071	NA	NA
UHGV-0065917_25	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0065917_26	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0065917_26	PHROG	phrog_24361	terminase	head and packaging
UHGV-0065917_26	UniRef90	UniRef90_R6ELB5	Putative terminase large subunit	NA
UHGV-0065917_26	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0065917_26	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0065917_26	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0065917_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-0065917_28	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0065917_28	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0065917_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0065917_30	PHROG	phrog_267	major head protein	head and packaging
UHGV-0065917_30	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0065917_30	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0065917_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0065917_31	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0065917_32	Structural annotation	PF20387	NA	NA
UHGV-0065917_33	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0065917_33	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0065917_33	Structural annotation	PF11134, MF_01282, TIGR03300, COG2319	NA	NA
UHGV-0065917_35	PHROG	phrog_13589	NA	unknown function
UHGV-0065917_35	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0065917_35	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0065917_37	Structural annotation	PF07328, NF001949	NA	NA
UHGV-0065917_38	PHROG	phrog_1129	holin	lysis
UHGV-0065917_38	UniRef90	UniRef90_A0A316QDA6	Enolase	NA
UHGV-0065917_38	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0065917_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0065917_39	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0065917_39	PHROG	phrog_435	endolysin	lysis
UHGV-0065917_39	UniRef90	UniRef90_UPI0006C33131	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0065917_39	eggNOG-mapper	411473.RUMCAL_00083	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0065917_39	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0065917_39	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA