UHGV-0065954

Genome information

Genome length 32,113 bps

CDS count 45

Completeness 83.02% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0065954
vOTU ID	vOTU-036598
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_84200
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.57
Jumbo phage	No

Genome content
Genome length	32,113 bps
GC content	44.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.36%
Average CDS length	675.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0065954_1	eggNOG-mapper	1235803.C825_05301	NA	NA
UHGV-0065954_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0065954_2	UniRef90	UniRef90_UPI000EE148FE	helix-turn-helix domain-containing protein	NA
UHGV-0065954_2	eggNOG-mapper	679189.HMPREF9019_0906	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0065954_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0065954_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0065954_8	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0065954_8	UniRef90	UniRef90_A0A414XJA7	NA	NA
UHGV-0065954_8	eggNOG-mapper	326298.Suden_1630	NA	NA
UHGV-0065954_8	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0065954_8	Structural annotation	PF19808	NA	NA
UHGV-0065954_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0065954_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0065954_9	UniRef90	UniRef90_A0A7L5ELS9	Replicative DNA helicase	NA
UHGV-0065954_9	eggNOG-mapper	742726.HMPREF9448_01056	Participates in initiation and elongation during chromosome replication	NA
UHGV-0065954_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0065954_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0065954_9	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0065954_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0065954_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0065954_10	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0065954_10	UniRef90	UniRef90_A0A414XJE9	HNH endonuclease	NA
UHGV-0065954_10	eggNOG-mapper	441620.Mpop_2691	endonuclease activity	NA
UHGV-0065954_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0065954_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0065954_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0065954_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0065954_11	UniRef90	UniRef90_UPI001899FFB2	tyrosine-type recombinase/integrase	NA
UHGV-0065954_11	eggNOG-mapper	1231336.L248_2264	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0065954_11	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0065954_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0065954_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0065954_11	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-0065954_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0065954_12	UniRef90	UniRef90_UPI001897D1F4	P27 family phage terminase small subunit	NA
UHGV-0065954_12	eggNOG-mapper	1433126.BN938_0464	Phage terminase, small subunit	NA
UHGV-0065954_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0065954_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0065954_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0065954_13	PHROG	phrog_36980	NA	unknown function
UHGV-0065954_13	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-0065954_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0065954_14	UniRef90	UniRef90_A0A3R6I174	Terminase large subunit	NA
UHGV-0065954_14	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-0065954_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0065954_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0065954_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0065954_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0065954_17	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0065954_17	UniRef90	UniRef90_UPI000E4781A9	radical SAM protein	NA
UHGV-0065954_17	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0065954_17	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0065954_17	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-0065954_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0065954_18	UniRef90	UniRef90_A0A3R6HIU9	Phage portal protein	NA
UHGV-0065954_18	eggNOG-mapper	573061.Clocel_0780	Phage portal protein, HK97 family	NA
UHGV-0065954_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0065954_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0065954_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0065954_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0065954_19	KOfam	K06904	NA	NA
UHGV-0065954_19	PHROG	phrog_617	major head protein	head and packaging
UHGV-0065954_19	UniRef90	UniRef90_UPI001898560D	HK97 family phage prohead protease	NA
UHGV-0065954_19	eggNOG-mapper	644968.DFW101_3507	Caudovirus prohead serine protease	NA
UHGV-0065954_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0065954_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0065954_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0065954_20	PHROG	phrog_617	major head protein	head and packaging
UHGV-0065954_20	UniRef90	UniRef90_A0A414XJF3	Phage major capsid protein	NA
UHGV-0065954_20	eggNOG-mapper	547045.NEISICOT_01400	Phage capsid family	NA
UHGV-0065954_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0065954_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0065954_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0065954_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0065954_21	UniRef90	UniRef90_A0A413IG96	Helix-hairpin-helix domain-containing protein	NA
UHGV-0065954_21	Structural annotation	PF01281, PF14520	NA	NA
UHGV-0065954_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0065954_22	UniRef90	UniRef90_A0A414XJC1	Phage gp6-like head-tail connector protein	NA
UHGV-0065954_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0065954_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0065954_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0065954_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0065954_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0065954_24	Structural annotation	PF09646	NA	NA
UHGV-0065954_25	Structural annotation	TIGR01725	NA	NA
UHGV-0065954_26	PHROG	phrog_1407	major tail protein	tail
UHGV-0065954_26	UniRef90	UniRef90_UPI000EE5B84C	phage tail tube protein	NA
UHGV-0065954_26	eggNOG-mapper	997884.HMPREF1068_00292	Phage tail tube protein	NA
UHGV-0065954_26	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0065954_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0065954_27	eggNOG-mapper	997884.HMPREF1068_00293	NA	NA
UHGV-0065954_27	Structural annotation	PF19591	NA	NA
UHGV-0065954_28	UniRef90	UniRef90_F3PQD8	Conserved domain protein	NA
UHGV-0065954_28	eggNOG-mapper	411901.BACCAC_00726	NA	NA
UHGV-0065954_30	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0065954_30	UniRef90	UniRef90_A0A316PAD9	Phage tail tape measure protein	NA
UHGV-0065954_30	eggNOG-mapper	411901.BACCAC_00724	Phage-related minor tail protein	NA
UHGV-0065954_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0065954_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0065954_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0065954_31	PHROG	phrog_30639	NA	unknown function
UHGV-0065954_31	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-0065954_31	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0065954_32	PHROG	phrog_26822	NA	unknown function
UHGV-0065954_32	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-0065954_32	COG	COG4926	Phage-related protein	NA
UHGV-0065954_32	Structural annotation	PF04862, PF21634, PF20236, NF033675	NA	NA
UHGV-0065954_34	eggNOG-mapper	1121098.HMPREF1534_01117	NA	NA
UHGV-0065954_36	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0065954_38	PHROG	phrog_4201	tail fiber protein	tail
UHGV-0065954_40	UniRef90	UniRef90_A0A1L5KZW2	NA	NA
UHGV-0065954_40	Structural annotation	PF06946	NA	NA
UHGV-0065954_41	PHROG	phrog_19698	NA	unknown function
UHGV-0065954_41	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0065954_42	PHROG	phrog_873	endolysin	head and packaging
UHGV-0065954_42	UniRef90	UniRef90_UPI00189E3BF4	structural protein P5	NA
UHGV-0065954_42	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-0065954_43	PHROG	phrog_26448	NA	unknown function
UHGV-0065954_43	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-0065954_43	Pfam	PF20647	NA	DUF6808
UHGV-0065954_43	Structural annotation	PF20647	NA	NA
UHGV-0065954_44	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0065954_44	PHROG	phrog_28593	NA	unknown function
UHGV-0065954_44	UniRef90	UniRef90_A0A174VU22	ComEC family competence protein	NA
UHGV-0065954_44	eggNOG-mapper	925409.KI911562_gene2837	competence protein COMEC	NA
UHGV-0065954_44	PADLOC	drt-cluster302	DRT	DRT
UHGV-0065954_44	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0065954_44	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0065954_45	eggNOG-mapper	933262.AXAM01000030_gene791	NA	NA