UHGV-0066092

Genome information

Genome length 36,056 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066092
vOTU ID	vOTU-059784
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_95349
BioSample	SAMEA2467077
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.72
Jumbo phage	No

Genome content
Genome length	36,056 bps
GC content	41.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.74%
Average CDS length	606.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066092_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0066092_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0066092_1	UniRef90	UniRef90_A0A6L9H5B9	Recombinase family protein (Fragment)	NA
UHGV-0066092_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0066092_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0066092_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0066092_2	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0066092_2	PHROG	phrog_7872	NA	unknown function
UHGV-0066092_2	UniRef90	UniRef90_A0A373MPY2	Ion channel	NA
UHGV-0066092_2	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0066092_2	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0066092_2	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0066092_2	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0066092_3	PHROG	phrog_38135	NA	unknown function
UHGV-0066092_3	UniRef90	UniRef90_UPI001F3985DB	NA	NA
UHGV-0066092_3	eggNOG-mapper	1280673.AUJJ01000019_gene1177	Transcriptional regulator	NA
UHGV-0066092_3	Pfam	PF14020	NA	DUF4236
UHGV-0066092_3	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0066092_3	Structural annotation	PF14020	NA	NA
UHGV-0066092_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0066092_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0066092_5	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0066092_5	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0066092_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066092_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0066092_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0066092_11	PHROG	phrog_20330	NA	unknown function
UHGV-0066092_11	eggNOG-mapper	565664.EFXG_02669	NA	NA
UHGV-0066092_13	PHROG	phrog_4392	NA	unknown function
UHGV-0066092_13	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0066092_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0066092_19	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0066092_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0066092_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0066092_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0066092_20	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-0066092_20	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0066092_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0066092_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0066092_20	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0066092_21	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0066092_22	PHROG	phrog_4433	NA	unknown function
UHGV-0066092_22	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0066092_22	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0066092_23	PHROG	phrog_8470	NA	unknown function
UHGV-0066092_23	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0066092_23	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0066092_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0066092_23	Structural annotation	PF14284	NA	NA
UHGV-0066092_24	PHROG	phrog_15077	NA	unknown function
UHGV-0066092_24	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0066092_24	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0066092_24	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0066092_25	PHROG	phrog_7566	NA	unknown function
UHGV-0066092_25	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0066092_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066092_31	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-0066092_31	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0066092_31	Pfam	PF07374	NA	DUF1492
UHGV-0066092_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0066092_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0066092_33	eggNOG-mapper	913865.DOT_2911	NA	NA
UHGV-0066092_34	Structural annotation	PF14524, NF041178	NA	NA
UHGV-0066092_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0066092_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066092_35	UniRef90	UniRef90_UPI00156F1D4A	HNH endonuclease	NA
UHGV-0066092_35	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0066092_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0066092_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0066092_36	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0066092_36	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0066092_36	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0066092_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0066092_36	COG	COG5484	NA	NA
UHGV-0066092_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0066092_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0066092_37	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0066092_37	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0066092_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0066092_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0066092_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0066092_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0066092_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0066092_38	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0066092_38	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0066092_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0066092_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0066092_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0066092_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0066092_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0066092_39	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0066092_39	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0066092_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0066092_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0066092_39	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0066092_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0066092_40	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0066092_40	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0066092_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0066092_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0066092_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0066092_40	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0066092_41	PHROG	phrog_749	NA	unknown function
UHGV-0066092_42	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0066092_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0066092_43	Structural annotation	PF05657	NA	NA
UHGV-0066092_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0066092_44	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0066092_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0066092_44	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0066092_45	PHROG	phrog_88	major tail protein	tail
UHGV-0066092_45	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0066092_45	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0066092_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0066092_45	COG	COG5492	NA	NA
UHGV-0066092_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0066092_47	KOfam	K19326	SYNE1; nesprin-1	NA
UHGV-0066092_47	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0066092_47	UniRef90	UniRef90_A0A374E9U4	Phage tail tape measure protein	NA
UHGV-0066092_47	eggNOG-mapper	397288.C806_00771	Phage-related minor tail protein	NA
UHGV-0066092_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0066092_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0066092_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0066092_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0066092_48	UniRef90	UniRef90_D4M599	Phage putative tail component, N-terminal domain	NA
UHGV-0066092_48	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0066092_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0066092_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0066092_49	PHROG	phrog_13289	tail protein	tail
UHGV-0066092_49	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-0066092_49	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0066092_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0066092_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0066092_49	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0066092_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0066092_50	PHROG	phrog_14030	NA	unknown function
UHGV-0066092_50	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-0066092_50	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0066092_50	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0066092_50	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0066092_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0066092_50	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0066092_51	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0066092_51	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0066092_52	PHROG	phrog_11541	NA	unknown function
UHGV-0066092_52	UniRef90	UniRef90_UPI001E3B00C2	SGNH/GDSL hydrolase family protein	NA
UHGV-0066092_52	eggNOG-mapper	243265.plu2328	lipolytic protein G-D-S-L family	NA
UHGV-0066092_52	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0066092_52	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0066092_55	PHROG	phrog_1863	NA	unknown function
UHGV-0066092_55	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA