UHGV-0066102

Genome information

Genome length 29,463 bps

CDS count 48

Completeness 74.55% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066102
vOTU ID	vOTU-017040
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_81784
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.3
Jumbo phage	No

Genome content
Genome length	29,463 bps
GC content	49.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.90%
Average CDS length	591.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066102_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0066102_1	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0066102_1	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0066102_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0066102_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0066102_1	Structural annotation	PF01507, MF_00064, TIGR00434	NA	NA
UHGV-0066102_2	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0066102_2	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0066102_2	UniRef90	UniRef90_A0A3D5LLL5	Beta sliding clamp	NA
UHGV-0066102_2	eggNOG-mapper	411471.SUBVAR_07116	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0066102_2	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0066102_2	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0066102_2	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0066102_2	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0066102_2	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0066102_2	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0066102_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0066102_4	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0066102_4	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0066102_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0066102_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0066102_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066102_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0066102_5	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0066102_5	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0066102_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0066102_6	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0066102_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0066102_6	Structural annotation	PF05772	NA	NA
UHGV-0066102_7	PHROG	phrog_7566	NA	unknown function
UHGV-0066102_7	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0066102_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0066102_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0066102_9	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0066102_9	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0066102_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0066102_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0066102_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0066102_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0066102_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0066102_10	PHROG	phrog_2113	NA	unknown function
UHGV-0066102_10	UniRef90	UniRef90_A0A832PDJ8	DNA replication protein	NA
UHGV-0066102_10	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-0066102_10	Structural annotation	PF21715	NA	NA
UHGV-0066102_11	PHROG	phrog_11769	NA	unknown function
UHGV-0066102_11	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0066102_11	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0066102_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0066102_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0066102_11	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0066102_13	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0066102_13	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0066102_13	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0066102_13	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0066102_13	Pfam	PF00692	dUTPase	dUTPase
UHGV-0066102_13	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0066102_13	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0066102_13	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0066102_14	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0066102_16	PHROG	phrog_8684	NA	unknown function
UHGV-0066102_16	UniRef90	UniRef90_A0A355KXQ4	YopX domain-containing protein	NA
UHGV-0066102_16	eggNOG-mapper	1246626.BleG1_2835	YopX protein	NA
UHGV-0066102_16	Pfam	PF09643	YopX protein	YopX
UHGV-0066102_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0066102_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0066102_18	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066102_18	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0066102_18	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-0066102_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0066102_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066102_19	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0066102_19	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0066102_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0066102_19	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0066102_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0066102_20	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0066102_20	UniRef90	UniRef90_UPI001C389DC7	NA	NA
UHGV-0066102_20	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0066102_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0066102_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0066102_20	Pfam	PF14386	NA	DUF4417
UHGV-0066102_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0066102_20	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0066102_22	eggNOG-mapper	1227349.C170_03268	NA	NA
UHGV-0066102_23	PHROG	phrog_2412	NA	unknown function
UHGV-0066102_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0066102_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0066102_24	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-0066102_24	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0066102_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0066102_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0066102_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0066102_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0066102_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0066102_26	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0066102_26	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0066102_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0066102_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0066102_27	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0066102_27	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0066102_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0066102_27	COG	COG2369	NA	NA
UHGV-0066102_27	Structural annotation	PF06152	NA	NA
UHGV-0066102_28	UniRef90	UniRef90_UPI0005F28447	phage scaffolding protein	NA
UHGV-0066102_28	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0066102_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0066102_29	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0066102_29	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0066102_29	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0066102_30	Pfam	PF13912	C2H2-type zinc finger	zf-C2H2_6
UHGV-0066102_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0066102_31	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0066102_31	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0066102_32	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0066102_32	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0066102_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0066102_33	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0066102_33	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0066102_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0066102_33	Structural annotation	PF11114	NA	NA
UHGV-0066102_34	PHROG	phrog_3266	tail completion	connector
UHGV-0066102_34	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0066102_34	Structural annotation	PF20765	NA	NA
UHGV-0066102_35	PHROG	phrog_3099	NA	unknown function
UHGV-0066102_35	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0066102_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0066102_36	PHROG	phrog_11299	NA	unknown function
UHGV-0066102_36	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0066102_36	Structural annotation	PF10666	NA	NA
UHGV-0066102_37	PHROG	phrog_706	NA	unknown function
UHGV-0066102_37	UniRef90	UniRef90_UPI00051C36A4	Gp15 family bacteriophage protein	NA
UHGV-0066102_37	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0066102_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0066102_37	Structural annotation	PF06854	NA	NA
UHGV-0066102_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0066102_38	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0066102_38	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0066102_38	COG	COG1511	NA	NA
UHGV-0066102_38	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0066102_39	PHROG	phrog_1194	NA	unknown function
UHGV-0066102_39	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-0066102_39	Pfam	PF20458	NA	DUF6711
UHGV-0066102_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0066102_40	PHROG	phrog_6616	tail protein	tail
UHGV-0066102_40	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0066102_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0066102_42	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0066102_43	Structural annotation	PF02973	NA	NA
UHGV-0066102_45	PHROG	phrog_27545	NA	unknown function
UHGV-0066102_45	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0066102_45	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0066102_45	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0066102_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0066102_46	PHROG	phrog_435	endolysin	lysis
UHGV-0066102_46	UniRef90	UniRef90_R6HWJ2	MurNAc-LAA domain-containing protein	NA
UHGV-0066102_46	eggNOG-mapper	1203606.HMPREF1526_00346	Ami_3	NA
UHGV-0066102_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0066102_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0066102_46	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0066102_47	PHROG	phrog_1863	NA	unknown function
UHGV-0066102_47	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0066102_47	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0066102_48	PHROG	phrog_263	holin	lysis
UHGV-0066102_48	UniRef90	UniRef90_R6ITV1	Phage lysis protein holin	NA
UHGV-0066102_48	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-0066102_48	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0066102_48	Structural annotation	PF04688, TIGR01592	NA	NA