UHGV-0066169

Genome information

Genome length 21,663 bps

CDS count 40

Completeness 56.16% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066169
vOTU ID	vOTU-024281
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_95301
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.98
Jumbo phage	No

Genome content
Genome length	21,663 bps
GC content	47.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.58%
Average CDS length	500.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066169_1	PHROG	phrog_15286	NA	unknown function
UHGV-0066169_1	UniRef90	UniRef90_A0A642A6Q3	Bro-N domain-containing protein (Fragment)	NA
UHGV-0066169_1	eggNOG-mapper	999413.HMPREF1094_00004	BRO family, N-terminal domain	NA
UHGV-0066169_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0066169_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0066169_2	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0066169_2	UniRef90	UniRef90_A0A316S905	DNA-binding protein	NA
UHGV-0066169_2	eggNOG-mapper	653733.Selin_1708	AntA/AntB antirepressor	NA
UHGV-0066169_2	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0066169_2	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0066169_2	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0066169_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0066169_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0066169_3	UniRef90	UniRef90_A0A3C1IP78	XRE family transcriptional regulator	NA
UHGV-0066169_3	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0066169_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066169_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0066169_3	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0066169_4	UniRef90	UniRef90_UPI00037B7FFB	helix-turn-helix domain-containing protein	NA
UHGV-0066169_4	eggNOG-mapper	1273103.NM10_03301	NA	NA
UHGV-0066169_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0066169_5	Structural annotation	PF13033	NA	NA
UHGV-0066169_7	UniRef90	UniRef90_R6WX79	DNA binding domain excisionase family protein	NA
UHGV-0066169_7	eggNOG-mapper	318464.IO99_13850	Helix-turn-helix domain	NA
UHGV-0066169_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0066169_7	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0066169_8	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0066169_8	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0066169_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0066169_10	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0066169_10	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0066169_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0066169_10	Structural annotation	PF05565	NA	NA
UHGV-0066169_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066169_11	UniRef90	UniRef90_UPI0015943421	ERF family protein	NA
UHGV-0066169_11	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0066169_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0066169_11	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0066169_12	PHROG	phrog_7566	NA	unknown function
UHGV-0066169_12	UniRef90	UniRef90_A0A1I0JPK6	Phosphoenolpyruvate carboxykinase	NA
UHGV-0066169_12	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0066169_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0066169_13	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0066169_13	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0066169_14	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0066169_14	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0066169_14	eggNOG-mapper	1178540.BA70_18625	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0066169_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0066169_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0066169_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0066169_14	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0066169_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0066169_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0066169_15	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0066169_15	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0066169_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0066169_15	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0066169_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0066169_15	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0066169_16	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066169_16	eggNOG-mapper	60520.HR47_11980	NA	NA
UHGV-0066169_18	PHROG	phrog_236	nucleotide kinase	other
UHGV-0066169_18	UniRef90	UniRef90_A0A6J5N804	SaV-like	NA
UHGV-0066169_18	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0066169_18	Pfam	PF11753	NA	DUF3310
UHGV-0066169_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0066169_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0066169_20	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0066169_20	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0066169_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0066169_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0066169_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0066169_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0066169_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0066169_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066169_22	UniRef90	UniRef90_UPI000BB69186	NA	NA
UHGV-0066169_22	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0066169_22	Pfam	PF06356	NA	DUF1064
UHGV-0066169_22	Structural annotation	PF06356	NA	NA
UHGV-0066169_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066169_23	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0066169_23	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0066169_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0066169_23	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0066169_24	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0066169_25	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0066169_25	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0066169_25	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0066169_25	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0066169_26	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-0066169_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0066169_27	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0066169_27	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0066169_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0066169_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0066169_27	COG	COG5410	NA	NA
UHGV-0066169_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0066169_28	PHROG	phrog_145	portal protein	head and packaging
UHGV-0066169_28	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0066169_28	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0066169_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0066169_29	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0066169_29	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0066169_29	eggNOG-mapper	1111454.HMPREF1250_1044	NA	NA
UHGV-0066169_30	PHROG	phrog_15041	NA	unknown function
UHGV-0066169_30	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0066169_30	Structural annotation	PF10827	NA	NA
UHGV-0066169_32	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0066169_32	Structural annotation	PF06810	NA	NA
UHGV-0066169_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-0066169_33	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0066169_33	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0066169_33	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0066169_33	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0066169_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0066169_34	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0066169_34	eggNOG-mapper	1000569.HMPREF1040_0194	Phage virion morphogenesis	NA
UHGV-0066169_34	COG	COG5005	NA	NA
UHGV-0066169_34	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0066169_35	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0066169_36	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0066169_36	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0066169_36	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0066169_37	PHROG	phrog_1407	major tail protein	tail
UHGV-0066169_37	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0066169_37	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0066169_37	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0066169_37	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0066169_37	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0066169_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0066169_38	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0066169_38	Structural annotation	PF19591	NA	NA
UHGV-0066169_40	PHROG	phrog_12798	NA	unknown function
UHGV-0066169_40	UniRef90	UniRef90_UPI00131A52B4	tape measure protein	NA
UHGV-0066169_40	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0066169_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0066169_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0066169_40	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA