UHGV-0066188

Genome information

Genome length 33,351 bps

CDS count 49

Completeness 93.47% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066188
vOTU ID	vOTU-077954
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_96429
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.36
Jumbo phage	No

Genome content
Genome length	33,351 bps
GC content	40.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.03%
Average CDS length	630.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066188_1	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0066188_2	PHROG	phrog_4105	NA	unknown function
UHGV-0066188_2	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0066188_4	eggNOG-mapper	86416.Clopa_2238	NA	NA
UHGV-0066188_5	UniRef90	UniRef90_UPI001C0F3DBD	NA	NA
UHGV-0066188_5	eggNOG-mapper	1196322.A370_04225	NA	NA
UHGV-0066188_6	PHROG	phrog_11541	NA	unknown function
UHGV-0066188_6	eggNOG-mapper	1280682.AUKA01000003_gene1368	NA	NA
UHGV-0066188_6	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0066188_9	PHROG	phrog_13289	tail protein	tail
UHGV-0066188_9	UniRef90	UniRef90_UPI001C3B5DCB	Phage tail protein	NA
UHGV-0066188_9	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0066188_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0066188_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0066188_9	COG	COG4926	Phage-related protein	NA
UHGV-0066188_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0066188_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0066188_10	UniRef90	UniRef90_A0A3E5GPI4	Phage tail protein	NA
UHGV-0066188_10	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0066188_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0066188_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0066188_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0066188_11	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0066188_11	UniRef90	UniRef90_A0A3E5GPN2	PhageMin_Tail domain-containing protein	NA
UHGV-0066188_11	eggNOG-mapper	1235798.C817_04592	Phage-related minor tail protein	NA
UHGV-0066188_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0066188_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0066188_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0066188_12	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0066188_12	Structural annotation	PF11836	NA	NA
UHGV-0066188_13	PHROG	phrog_88	major tail protein	tail
UHGV-0066188_13	UniRef90	UniRef90_A0A3E5GPH8	Phage tail protein	NA
UHGV-0066188_13	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0066188_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0066188_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0066188_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0066188_14	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0066188_14	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0066188_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0066188_14	Structural annotation	TIGR01725	NA	NA
UHGV-0066188_15	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0066188_15	Structural annotation	PF05657	NA	NA
UHGV-0066188_16	PHROG	phrog_19734	NA	unknown function
UHGV-0066188_16	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0066188_16	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0066188_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0066188_17	PHROG	phrog_2550	NA	unknown function
UHGV-0066188_17	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0066188_17	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0066188_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0066188_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0066188_18	UniRef90	UniRef90_A0A3E5GPH2	Phage major capsid protein	NA
UHGV-0066188_18	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0066188_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0066188_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0066188_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0066188_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0066188_19	KOfam	K06904	NA	NA
UHGV-0066188_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0066188_19	UniRef90	UniRef90_A0A3E5GPG5	HK97 family phage prohead protease	NA
UHGV-0066188_19	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0066188_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0066188_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0066188_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0066188_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0066188_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0066188_20	UniRef90	UniRef90_A0A3E5GPS9	Phage portal protein	NA
UHGV-0066188_20	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0066188_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0066188_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0066188_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0066188_20	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0066188_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0066188_21	UniRef90	UniRef90_A0A3E5GPH3	Terminase large subunit	NA
UHGV-0066188_21	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0066188_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0066188_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0066188_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0066188_21	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0066188_22	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0066188_22	UniRef90	UniRef90_UPI001A918125	P27 family phage terminase small subunit	NA
UHGV-0066188_22	eggNOG-mapper	913865.DOT_5637	phage terminase small subunit	NA
UHGV-0066188_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0066188_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0066188_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066188_23	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0066188_23	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0066188_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0066188_23	Structural annotation	TIGR02646	NA	NA
UHGV-0066188_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066188_24	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0066188_24	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-0066188_24	Pfam	PF07374	NA	DUF1492
UHGV-0066188_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0066188_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0066188_27	Structural annotation	PF10400	NA	NA
UHGV-0066188_28	PHROG	phrog_3154	NA	unknown function
UHGV-0066188_28	UniRef90	UniRef90_UPI000CF8F0F1	NA	NA
UHGV-0066188_28	eggNOG-mapper	97139.C824_02654	NA	NA
UHGV-0066188_28	Pfam	PF07866	NA	DUF1653
UHGV-0066188_28	COG	COG4728	NA	NA
UHGV-0066188_28	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0066188_30	PHROG	phrog_8684	NA	unknown function
UHGV-0066188_30	UniRef90	UniRef90_UPI001C00C8FC	YopX family protein	NA
UHGV-0066188_30	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0066188_30	Pfam	PF09643	YopX protein	YopX
UHGV-0066188_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0066188_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0066188_31	PHROG	phrog_7566	NA	unknown function
UHGV-0066188_31	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0066188_32	PHROG	phrog_15077	NA	unknown function
UHGV-0066188_32	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0066188_32	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0066188_33	PHROG	phrog_8470	NA	unknown function
UHGV-0066188_33	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0066188_33	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0066188_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0066188_33	Structural annotation	PF14284	NA	NA
UHGV-0066188_34	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0066188_35	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0066188_35	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0066188_35	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-0066188_35	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0066188_35	Pfam	PF00075	RNase H	RNase_H
UHGV-0066188_35	COG	COG0328	Ribonuclease HI	NA
UHGV-0066188_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0066188_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0066188_37	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0066188_37	Structural annotation	PF01446	NA	NA
UHGV-0066188_43	PHROG	phrog_20330	NA	unknown function
UHGV-0066188_43	eggNOG-mapper	1158601.I585_00709	NA	NA
UHGV-0066188_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0066188_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0066188_45	UniRef90	UniRef90_UPI0003FEB08A	helix-turn-helix domain-containing protein	NA
UHGV-0066188_45	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0066188_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066188_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0066188_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0066188_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0066188_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0066188_48	UniRef90	UniRef90_A0A173SBX0	DNA-invertase hin	NA
UHGV-0066188_48	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0066188_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0066188_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0066188_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0066188_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0066188_48	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0066188_49	UniRef90	UniRef90_R6G3J8	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0066188_49	eggNOG-mapper	411462.DORLON_00563	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0066188_49	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA