UHGV-0066419

Genome information

Genome length 36,411 bps

CDS count 45

Completeness 89.81% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066419
vOTU ID	vOTU-041819
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_99069
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-0.08
Jumbo phage	No

Genome content
Genome length	36,411 bps
GC content	52.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.30%
Average CDS length	772.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066419_1	Pfam	PF20647	NA	DUF6808
UHGV-0066419_1	Structural annotation	PF20647	NA	NA
UHGV-0066419_2	PHROG	phrog_873	endolysin	head and packaging
UHGV-0066419_2	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0066419_2	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0066419_4	UniRef90	UniRef90_A0A495VV42	Holin family protein	NA
UHGV-0066419_4	eggNOG-mapper	679935.Alfi_2717	NA	NA
UHGV-0066419_4	Structural annotation	PF05105	NA	NA
UHGV-0066419_5	Structural annotation	PF10043, NF008028	NA	NA
UHGV-0066419_6	Structural annotation	PF02185	NA	NA
UHGV-0066419_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0066419_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0066419_7	UniRef90	UniRef90_A0A373ZQH3	Reverse transcriptase domain-containing protein	NA
UHGV-0066419_7	eggNOG-mapper	411479.BACUNI_00629	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0066419_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0066419_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0066419_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0066419_7	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0066419_8	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0066419_9	Structural annotation	PF07603	NA	NA
UHGV-0066419_10	PHROG	phrog_19280	NA	unknown function
UHGV-0066419_11	PHROG	phrog_24616	NA	unknown function
UHGV-0066419_11	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0066419_11	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0066419_11	Structural annotation	PF20459	NA	NA
UHGV-0066419_12	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0066419_12	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0066419_12	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0066419_13	PHROG	phrog_37138	NA	unknown function
UHGV-0066419_13	eggNOG-mapper	1122981.AUME01000026_gene519	NA	NA
UHGV-0066419_14	PHROG	phrog_21217	NA	unknown function
UHGV-0066419_14	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-0066419_15	PHROG	phrog_38780	NA	unknown function
UHGV-0066419_15	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0066419_15	eggNOG-mapper	742767.HMPREF9456_03365	NA	NA
UHGV-0066419_15	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0066419_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0066419_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0066419_16	UniRef90	UniRef90_A0A373ZMP4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0066419_16	eggNOG-mapper	1122931.AUAE01000005_gene3257	Clp protease	NA
UHGV-0066419_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0066419_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0066419_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0066419_17	PHROG	phrog_17790	NA	unknown function
UHGV-0066419_17	UniRef90	UniRef90_A0A5C6KEU3	Helix-turn-helix domain-containing protein	NA
UHGV-0066419_17	eggNOG-mapper	457424.BFAG_03317	NA	NA
UHGV-0066419_18	PHROG	phrog_37298	NA	unknown function
UHGV-0066419_18	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0066419_18	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0066419_18	COG	COG1511	NA	NA
UHGV-0066419_19	PHROG	phrog_33698	NA	unknown function
UHGV-0066419_19	eggNOG-mapper	483215.BACFIN_07520	NA	NA
UHGV-0066419_19	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0066419_20	PHROG	phrog_37065	NA	unknown function
UHGV-0066419_20	eggNOG-mapper	357276.EL88_08395	NA	NA
UHGV-0066419_20	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0066419_21	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0066419_21	eggNOG-mapper	762984.HMPREF9445_00170	NA	NA
UHGV-0066419_22	PHROG	phrog_33245	NA	unknown function
UHGV-0066419_22	eggNOG-mapper	1122931.AUAE01000005_gene3264	NA	NA
UHGV-0066419_22	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0066419_23	PHROG	phrog_28240	NA	unknown function
UHGV-0066419_23	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0066419_23	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0066419_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0066419_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0066419_24	UniRef90	UniRef90_A0A373ZSP1	Phage portal protein	NA
UHGV-0066419_24	eggNOG-mapper	1122931.AUAE01000005_gene3266	Terminase-like family	NA
UHGV-0066419_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0066419_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0066419_24	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0066419_25	eggNOG-mapper	886379.AEWI01000001_gene1749	NA	NA
UHGV-0066419_26	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0066419_26	UniRef90	UniRef90_A0A822UCQ7	ParB-like nuclease	NA
UHGV-0066419_26	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0066419_26	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0066419_26	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0066419_27	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0066419_27	UniRef90	UniRef90_A0A2E8DGT3	DNA methylase	NA
UHGV-0066419_27	eggNOG-mapper	1080067.BAZH01000020_gene3102	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0066419_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0066419_27	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0066419_28	PHROG	phrog_824	NA	unknown function
UHGV-0066419_28	UniRef90	UniRef90_A0A373ZU69	VRR-NUC domain-containing protein	NA
UHGV-0066419_28	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-0066419_28	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0066419_29	eggNOG-mapper	470145.BACCOP_01750	NA	NA
UHGV-0066419_29	Structural annotation	PF18697	NA	NA
UHGV-0066419_30	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0066419_30	eggNOG-mapper	1121441.AUCX01000014_gene525	NA	NA
UHGV-0066419_30	Structural annotation	PF10771, NF041413, COG5529	NA	NA
UHGV-0066419_31	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0066419_31	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0066419_31	UniRef90	UniRef90_A0A373ZV76	MBL fold metallo-hydrolase	NA
UHGV-0066419_31	eggNOG-mapper	457424.BFAG_02390	Metallo-beta-lactamase superfamily	NA
UHGV-0066419_31	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0066419_31	dbAPIS	APIS066	NA	NA
UHGV-0066419_31	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0066419_31	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0066419_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0066419_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066419_32	UniRef90	UniRef90_A0A373ZS10	Recombinase RecT	NA
UHGV-0066419_32	eggNOG-mapper	1499683.CCFF01000017_gene2606	RecT family	NA
UHGV-0066419_32	Pfam	PF03837	RecT family	RecT
UHGV-0066419_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0066419_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0066419_33	PHROG	phrog_22392	NA	unknown function
UHGV-0066419_33	UniRef90	UniRef90_A0A3D1NR25	Demethylase	NA
UHGV-0066419_33	eggNOG-mapper	1121098.HMPREF1534_01085	NA	NA
UHGV-0066419_34	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0066419_34	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066419_34	UniRef90	UniRef90_U2CKT2	AAA_23 domain-containing protein	NA
UHGV-0066419_34	eggNOG-mapper	449673.BACSTE_02216	P-loop containing region of AAA domain	NA
UHGV-0066419_34	PADLOC	AAA_15	NA	NA
UHGV-0066419_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-0066419_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0066419_34	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0066419_36	PHROG	phrog_32997	NA	unknown function
UHGV-0066419_36	UniRef90	UniRef90_A0A373ZS05	Ribosomal large subunit pseudouridine synthase B	NA
UHGV-0066419_36	eggNOG-mapper	470145.BACCOP_01142	NA	NA
UHGV-0066419_37	PHROG	phrog_17289	NA	unknown function
UHGV-0066419_37	eggNOG-mapper	742766.HMPREF9455_03116	NA	NA
UHGV-0066419_39	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0066419_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0066419_41	UniRef90	UniRef90_A0A845PBF9	Helix-turn-helix transcriptional regulator	NA
UHGV-0066419_41	eggNOG-mapper	1227276.HMPREF9148_01940	Transcriptional regulator	NA
UHGV-0066419_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0066419_41	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0066419_41	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0066419_43	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0066419_43	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066419_43	UniRef90	UniRef90_A0A373ZS20	Restriction endonuclease	NA
UHGV-0066419_43	eggNOG-mapper	762984.HMPREF9445_00134	Type I restriction enzyme HsdR protein	NA
UHGV-0066419_43	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0066419_43	COG	COG4748	NA	NA
UHGV-0066419_43	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0066419_44	PHROG	phrog_9710	NA	unknown function
UHGV-0066419_44	eggNOG-mapper	1235788.C802_00041	NA	NA
UHGV-0066419_44	Structural annotation	PF07022	NA	NA
UHGV-0066419_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0066419_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0066419_45	UniRef90	UniRef90_UPI001D07DFD5	site-specific integrase	NA
UHGV-0066419_45	eggNOG-mapper	742766.HMPREF9455_03139	Phage integrase SAM-like domain	NA
UHGV-0066419_45	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0066419_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0066419_45	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA