UHGV-0066429

Genome information

Genome length 39,441 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066429
vOTU ID	vOTU-045069
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_81768
BioSample	SAMEA2338871
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.16
Jumbo phage	No

Genome content
Genome length	39,441 bps
GC content	40.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.95%
Average CDS length	646.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066429_1	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0066429_1	UniRef90	UniRef90_A0A371P081	Phage head morphogenesis protein	NA
UHGV-0066429_1	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0066429_1	COG	COG2369	NA	NA
UHGV-0066429_2	PHROG	phrog_64	portal protein	head and packaging
UHGV-0066429_2	UniRef90	UniRef90_A0A173W966	Phage portal protein, SPP1 family	NA
UHGV-0066429_2	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0066429_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0066429_2	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0066429_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0066429_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0066429_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0066429_3	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0066429_3	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0066429_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0066429_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0066429_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0066429_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0066429_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0066429_5	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0066429_5	PHROG	phrog_35286	NA	unknown function
UHGV-0066429_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0066429_5	Structural annotation	PF16967	NA	NA
UHGV-0066429_6	PHROG	phrog_2412	NA	unknown function
UHGV-0066429_6	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0066429_6	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0066429_7	PHROG	phrog_5057	NA	unknown function
UHGV-0066429_9	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0066429_9	UniRef90	UniRef90_A0A173W6N8	ParB-like nuclease domain	NA
UHGV-0066429_9	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0066429_9	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0066429_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0066429_9	Pfam	PF14386	NA	DUF4417
UHGV-0066429_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0066429_9	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0066429_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066429_11	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0066429_11	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0066429_11	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0066429_11	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0066429_12	PHROG	phrog_17690	NA	unknown function
UHGV-0066429_12	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0066429_12	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0066429_18	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0066429_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0066429_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0066429_19	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0066429_19	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0066429_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0066429_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0066429_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0066429_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0066429_21	PHROG	phrog_5070	NA	unknown function
UHGV-0066429_21	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0066429_21	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0066429_21	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0066429_21	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0066429_22	PHROG	phrog_9804	NA	unknown function
UHGV-0066429_22	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0066429_22	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0066429_22	AcrCatalog	cluster_137185	NA	NA
UHGV-0066429_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0066429_22	Structural annotation	PF11417	NA	NA
UHGV-0066429_24	PHROG	phrog_16304	NA	unknown function
UHGV-0066429_24	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0066429_24	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0066429_24	Pfam	PF19808	NA	DUF6291
UHGV-0066429_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0066429_24	Structural annotation	PF19808	NA	NA
UHGV-0066429_25	eggNOG-mapper	457412.RSAG_00329	NA	NA
UHGV-0066429_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066429_26	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0066429_26	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0066429_26	Pfam	PF06356	NA	DUF1064
UHGV-0066429_26	Structural annotation	PF06356	NA	NA
UHGV-0066429_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0066429_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066429_27	UniRef90	UniRef90_A0A416ZXI3	Recombinase	NA
UHGV-0066429_27	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0066429_27	Pfam	PF03837	RecT family	RecT
UHGV-0066429_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0066429_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0066429_27	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0066429_29	PHROG	phrog_674	NA	unknown function
UHGV-0066429_29	UniRef90	UniRef90_UPI00156FBAC2	NA	NA
UHGV-0066429_29	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0066429_29	Pfam	PF07083	NA	DUF1351
UHGV-0066429_29	Structural annotation	PF07083	NA	NA
UHGV-0066429_31	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066429_31	UniRef90	UniRef90_A0A3R6XK93	Recombinase	NA
UHGV-0066429_31	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0066429_31	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0066429_31	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0066429_31	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0066429_32	PHROG	phrog_6058	NA	unknown function
UHGV-0066429_32	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0066429_33	UniRef90	UniRef90_A0A173W999	Helix-turn-helix domain	NA
UHGV-0066429_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066429_34	PHROG	phrog_3202	NA	unknown function
UHGV-0066429_34	UniRef90	UniRef90_A0A1Y4R5Y7	YjzC family protein	NA
UHGV-0066429_34	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0066429_34	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0066429_34	Structural annotation	PF14168	NA	NA
UHGV-0066429_35	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0066429_35	Structural annotation	PF20063	NA	NA
UHGV-0066429_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0066429_36	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0066429_36	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0066429_36	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0066429_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0066429_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066429_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0066429_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0066429_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0066429_37	UniRef90	UniRef90_A0A822LS29	HTH cro/C1-type domain-containing protein	NA
UHGV-0066429_37	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0066429_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066429_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0066429_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0066429_37	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0066429_38	UniRef90	UniRef90_UPI00189DFA3E	SAP domain-containing protein	NA
UHGV-0066429_38	eggNOG-mapper	1282664.H354_06896	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0066429_38	Pfam	PF02037	SAP domain	SAP
UHGV-0066429_39	KOfam	K14059	int; integrase	NA
UHGV-0066429_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0066429_39	UniRef90	UniRef90_A0A417W6N2	Site-specific integrase	NA
UHGV-0066429_39	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0066429_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0066429_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0066429_39	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0066429_40	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0066429_40	PHROG	phrog_9589	endolysin	lysis
UHGV-0066429_40	UniRef90	UniRef90_A0A3R6X4L7	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0066429_40	eggNOG-mapper	1235798.C817_02139	COG COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	NA
UHGV-0066429_40	Pfam	PF05257	CHAP domain	CHAP
UHGV-0066429_40	Pfam	PF01476	LysM domain	LysM
UHGV-0066429_40	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0066429_40	Structural annotation	PF01476, PF10030, MF_02014, TIGR02594, NF004974, COG1388, COG4322	NA	NA
UHGV-0066429_41	PHROG	phrog_199	holin	lysis
UHGV-0066429_41	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0066429_41	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0066429_41	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0066429_41	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0066429_41	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0066429_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0066429_42	PHROG	phrog_6616	tail protein	tail
UHGV-0066429_42	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0066429_42	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0066429_42	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0066429_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0066429_43	PHROG	phrog_1194	NA	unknown function
UHGV-0066429_43	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0066429_43	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0066429_43	Pfam	PF20458	NA	DUF6711
UHGV-0066429_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0066429_44	KOfam	K12478	EEA1; early endosome antigen 1	NA
UHGV-0066429_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0066429_44	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0066429_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0066429_46	Structural annotation	PF11836	NA	NA
UHGV-0066429_47	PHROG	phrog_158	major tail protein	tail
UHGV-0066429_47	UniRef90	UniRef90_A0A173W733	Phage tail protein	NA
UHGV-0066429_47	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0066429_47	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0066429_47	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0066429_48	Structural annotation	PF05657	NA	NA
UHGV-0066429_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0066429_49	UniRef90	UniRef90_A0A173W5Z4	Phage protein, HK97 gp10 family	NA
UHGV-0066429_49	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0066429_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0066429_49	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0066429_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0066429_50	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0066429_51	Structural annotation	PF05135	NA	NA
UHGV-0066429_53	PHROG	phrog_267	major head protein	head and packaging
UHGV-0066429_53	UniRef90	UniRef90_A0A173W8U9	p22 coat protein-gene protein 5	NA
UHGV-0066429_53	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0066429_53	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0066429_54	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0066429_54	UniRef90	UniRef90_UPI00189A8A5B	NA	NA
UHGV-0066429_54	eggNOG-mapper	1443125.Z962_07915	NA	NA
UHGV-0066429_54	Pfam	PF14265	NA	DUF4355
UHGV-0066429_55	PHROG	phrog_872	NA	unknown function
UHGV-0066429_55	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0066429_55	eggNOG-mapper	749222.Nitsa_1194	NA	NA
UHGV-0066429_55	Pfam	PF11195	NA	DUF2829
UHGV-0066429_55	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0066429_55	Structural annotation	PF11195	NA	NA
UHGV-0066429_56	eggNOG-mapper	861454.HMPREF9099_02115	NA	NA
UHGV-0066429_57	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0066429_57	UniRef90	UniRef90_A0A6N9K285	Phage_Mu_F domain-containing protein	NA
UHGV-0066429_57	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-0066429_57	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0066429_57	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0066429_57	COG	COG2369	NA	NA