UHGV-0066548

Genome information

Genome length 36,369 bps

CDS count 57

Completeness 89.21% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066548
vOTU ID	vOTU-041181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_83988
BioSample	SAMEA2338851
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.07
Jumbo phage	No

Genome content
Genome length	36,369 bps
GC content	48.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.40%
Average CDS length	575.63 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066548_1	KOfam	K14059	int; integrase	NA
UHGV-0066548_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0066548_1	UniRef90	UniRef90_A0A3R6MTQ4	Site-specific integrase	NA
UHGV-0066548_1	eggNOG-mapper	608534.GCWU000341_02323	Belongs to the 'phage' integrase family	NA
UHGV-0066548_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0066548_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0066548_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0066548_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0066548_2	PHROG	phrog_28892	NA	unknown function
UHGV-0066548_2	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-0066548_2	eggNOG-mapper	1211817.CCAT010000008_gene969	NA	NA
UHGV-0066548_3	PHROG	phrog_87	metallo-protease	other
UHGV-0066548_3	UniRef90	UniRef90_UPI001594DA7B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0066548_3	eggNOG-mapper	742740.HMPREF9474_03480	NA	NA
UHGV-0066548_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0066548_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0066548_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0066548_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0066548_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0066548_4	UniRef90	UniRef90_A0A1C7G697	Transcriptional regulator	NA
UHGV-0066548_4	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0066548_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066548_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0066548_4	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0066548_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0066548_5	UniRef90	UniRef90_A0A416G608	XRE family transcriptional regulator	NA
UHGV-0066548_5	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0066548_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0066548_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0066548_14	UniRef90	UniRef90_UPI001BC23C38	Nitrogenase molybdenum-iron protein subunit beta	NA
UHGV-0066548_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0066548_16	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-0066548_16	eggNOG-mapper	447909.A6M981_9VIRU	Siphovirus Gp157	NA
UHGV-0066548_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0066548_16	Structural annotation	PF05565	NA	NA
UHGV-0066548_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066548_17	UniRef90	UniRef90_A0A416D916	Single-stranded DNA-binding protein	NA
UHGV-0066548_17	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0066548_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-0066548_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0066548_17	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0066548_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0066548_18	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0066548_18	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0066548_19	PHROG	phrog_7566	NA	unknown function
UHGV-0066548_19	UniRef90	UniRef90_A0A3R6TI62	Phosphoenolpyruvate carboxykinase	NA
UHGV-0066548_19	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0066548_20	PHROG	phrog_2113	NA	unknown function
UHGV-0066548_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066548_21	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0066548_21	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0066548_22	PHROG	phrog_15768	NA	unknown function
UHGV-0066548_22	UniRef90	UniRef90_A0A316T437	NA	NA
UHGV-0066548_22	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0066548_22	AcrCatalog	cluster_38323	NA	NA
UHGV-0066548_22	Pfam	PF19808	NA	DUF6291
UHGV-0066548_22	Structural annotation	PF19808	NA	NA
UHGV-0066548_23	Structural annotation	PF02295, PF18697, MF_01177, NF033788, COG0640	NA	NA
UHGV-0066548_24	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0066548_24	AcrCatalog	cluster_11670	NA	NA
UHGV-0066548_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0066548_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0066548_27	UniRef90	UniRef90_A0A3R6RTV6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0066548_27	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0066548_27	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0066548_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0066548_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0066548_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0066548_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066548_28	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0066548_28	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-0066548_28	Structural annotation	PF02996	NA	NA
UHGV-0066548_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0066548_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0066548_30	UniRef90	UniRef90_A0A416L6A9	Phage portal protein	NA
UHGV-0066548_30	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0066548_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0066548_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0066548_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0066548_30	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0066548_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0066548_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0066548_31	UniRef90	UniRef90_A0A416G636	PBSX family phage terminase large subunit	NA
UHGV-0066548_31	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0066548_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0066548_31	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0066548_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0066548_32	UniRef90	UniRef90_A0A417SPJ5	Phage portal protein	NA
UHGV-0066548_32	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0066548_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0066548_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0066548_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0066548_33	UniRef90	UniRef90_A0A3R6Q5I6	Minor capsid protein	NA
UHGV-0066548_33	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0066548_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0066548_33	COG	COG2369	NA	NA
UHGV-0066548_33	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0066548_34	PHROG	phrog_27009	NA	unknown function
UHGV-0066548_35	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0066548_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0066548_36	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-0066548_36	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0066548_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0066548_36	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0066548_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0066548_37	UniRef90	UniRef90_A0A3R6L2J3	Phage major capsid protein	NA
UHGV-0066548_37	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0066548_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0066548_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0066548_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0066548_37	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0066548_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0066548_38	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0066548_39	PHROG	phrog_3366	NA	unknown function
UHGV-0066548_39	Pfam	PF20536	NA	DUF6751
UHGV-0066548_39	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0066548_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0066548_40	UniRef90	UniRef90_UPI00156EFCF3	minor capsid protein	NA
UHGV-0066548_40	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0066548_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0066548_40	Structural annotation	PF11114	NA	NA
UHGV-0066548_41	PHROG	phrog_3266	tail completion	connector
UHGV-0066548_41	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0066548_41	Structural annotation	PF12691	NA	NA
UHGV-0066548_42	PHROG	phrog_820	major tail protein	tail
UHGV-0066548_42	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0066548_42	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0066548_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0066548_43	Structural annotation	PF20378	NA	NA
UHGV-0066548_44	PHROG	phrog_706	NA	unknown function
UHGV-0066548_44	UniRef90	UniRef90_A0A1C5ZNX7	Bacteriophage Gp15 protein	NA
UHGV-0066548_44	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0066548_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0066548_44	Structural annotation	PF06854	NA	NA
UHGV-0066548_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0066548_45	UniRef90	UniRef90_A0A3R6MPD0	Phage tail tape measure protein	NA
UHGV-0066548_45	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0066548_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0066548_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0066548_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0066548_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0066548_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0066548_46	UniRef90	UniRef90_A0A416L6F4	MtfA protein	NA
UHGV-0066548_46	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0066548_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0066548_46	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0066548_47	PHROG	phrog_3558	tail protein	tail
UHGV-0066548_47	UniRef90	UniRef90_A0A417J5P4	Prophage_tail domain-containing protein	NA
UHGV-0066548_47	eggNOG-mapper	1304866.K413DRAFT_1236	Phage minor structural protein, N-terminal	NA
UHGV-0066548_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0066548_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0066548_47	COG	COG4926	Phage-related protein	NA
UHGV-0066548_47	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0066548_48	PHROG	phrog_18444	NA	unknown function
UHGV-0066548_49	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0066548_50	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0066548_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0066548_50	UniRef90	UniRef90_A0A396NBJ2	Integrase	NA
UHGV-0066548_50	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0066548_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0066548_50	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0066548_50	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0066548_51	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0066548_52	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0066548_52	Structural annotation	NF040910	NA	NA
UHGV-0066548_53	PHROG	phrog_1863	NA	unknown function
UHGV-0066548_53	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0066548_53	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0066548_54	PHROG	phrog_13256	NA	unknown function
UHGV-0066548_54	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0066548_56	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0066548_56	PHROG	phrog_2649	endolysin	lysis
UHGV-0066548_56	UniRef90	UniRef90_A0A3R6P7K5	Peptidase_M15_4 domain-containing protein	NA
UHGV-0066548_56	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0066548_56	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0066548_56	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0066548_56	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0066548_57	UniRef90	UniRef90_R7B5B4	Anti-sigma-W factor RsiW	NA
UHGV-0066548_57	eggNOG-mapper	742741.HMPREF9475_03787	Putative zinc-finger	NA
UHGV-0066548_57	Pfam	PF13490	Putative zinc-finger	zf-HC2