UHGV-0066639

Genome information

Genome length 28,700 bps

CDS count 38

Completeness 64.93% (medium-quality)

geNomad score 0.9352

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066639
vOTU ID	vOTU-018990
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_70319
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9352
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.86
Jumbo phage	No

Genome content
Genome length	28,700 bps
GC content	56.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	87.49%
Average CDS length	663.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066639_1	KOfam	K02470	gyrB; DNA gyrase subunit B [EC:5.6.2.2]	NA
UHGV-0066639_1	PHROG	phrog_543	DNA topoisomerase II large subunit	DNA, RNA and nucleotide metabolism
UHGV-0066639_1	UniRef90	UniRef90_A0A359G5G4	DNA topoisomerase (ATP-hydrolyzing) (Fragment)	NA
UHGV-0066639_1	eggNOG-mapper	1203611.KB894544_gene2199	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	NA
UHGV-0066639_1	Pfam	PF21249	GyrB, hook	GyrB_hook
UHGV-0066639_1	Pfam	PF00986	DNA gyrase B subunit, carboxyl terminus	DNA_gyraseB_C
UHGV-0066639_1	COG	COG0187	DNA gyrase/topoisomerase IV, subunit B	NA
UHGV-0066639_1	Structural annotation	PF00986	NA	NA
UHGV-0066639_2	KOfam	K00876	udk, UCK; uridine kinase [EC:2.7.1.48]	NA
UHGV-0066639_2	UniRef90	UniRef90_A0A143XVS9	Uridine kinase	NA
UHGV-0066639_2	eggNOG-mapper	679935.Alfi_3038	Cytidine monophosphokinase	NA
UHGV-0066639_2	Pfam	PF00485	Phosphoribulokinase / Uridine kinase family	PRK
UHGV-0066639_2	NCBIFam	NF004018.0	uridine kinase	NA
UHGV-0066639_2	COG	COG0572	Uridine kinase	NA
UHGV-0066639_3	UniRef90	UniRef90_UPI001EDC387B	helix-turn-helix domain-containing protein	NA
UHGV-0066639_3	eggNOG-mapper	470145.BACCOP_03758	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0066639_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0066639_4	PHROG	phrog_16858	NA	unknown function
UHGV-0066639_4	UniRef90	UniRef90_A0A3D1NSS9	ArsR family transcriptional regulator	NA
UHGV-0066639_4	eggNOG-mapper	1121101.HMPREF1532_03604	NA	NA
UHGV-0066639_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0066639_5	UniRef90	UniRef90_A0A143XNK7	Bro-N domain-containing protein	NA
UHGV-0066639_5	eggNOG-mapper	1123058.KB894230_gene1175	BRO family, N-terminal domain	NA
UHGV-0066639_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0066639_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0066639_8	PHROG	phrog_310	transposase	integration and excision
UHGV-0066639_8	UniRef90	UniRef90_A0A143XRB0	Integrase core domain protein	NA
UHGV-0066639_8	eggNOG-mapper	709991.Odosp_0824	Transposase and inactivated derivatives	NA
UHGV-0066639_8	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0066639_8	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0066639_8	Structural annotation	PF02914, PF09039, PF09299, NF033594, COG2801	NA	NA
UHGV-0066639_9	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0066639_9	UniRef90	UniRef90_A0A143XT51	AAA domain-containing protein	NA
UHGV-0066639_9	eggNOG-mapper	1122989.KB898603_gene89	AAA domain	NA
UHGV-0066639_9	Pfam	PF13401	AAA domain	AAA_22
UHGV-0066639_9	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0066639_9	Structural annotation	PF13401, MF_01509, TIGR03015, TIGR03070, COG2842	NA	NA
UHGV-0066639_10	PHROG	phrog_6891	ATPase	other
UHGV-0066639_10	UniRef90	UniRef90_A0A143XR48	DNA repair protein RadA	NA
UHGV-0066639_10	eggNOG-mapper	1235813.JCM10003_621	ATP-dependent serine protease	NA
UHGV-0066639_10	Pfam	PF13481	AAA domain	AAA_25
UHGV-0066639_10	COG	COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	NA
UHGV-0066639_10	Structural annotation	PF03796, MF_01498, TIGR00416, COG1066	NA	NA
UHGV-0066639_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0066639_11	UniRef90	UniRef90_UPI001B3A6A86	NA	NA
UHGV-0066639_11	eggNOG-mapper	1127692.HMPREF9075_00061	NA	NA
UHGV-0066639_11	Pfam	PF14359	NA	DUF4406
UHGV-0066639_11	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0066639_12	PHROG	phrog_14123	NA	unknown function
UHGV-0066639_12	eggNOG-mapper	1236497.BAJQ01000020_gene1870	NA	NA
UHGV-0066639_13	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0066639_13	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0066639_13	Structural annotation	MF_01691, TIGR03532, COG2171	NA	NA
UHGV-0066639_14	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0066639_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0066639_14	Structural annotation	MF_01691, TIGR03532, COG2171	NA	NA
UHGV-0066639_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0066639_15	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0066639_15	UniRef90	UniRef90_A0A374A0C9	Cytosine-specific methyltransferase	NA
UHGV-0066639_15	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0066639_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0066639_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0066639_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0066639_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0066639_15	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0066639_17	PHROG	phrog_874	NA	unknown function
UHGV-0066639_17	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0066639_17	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0066639_18	PHROG	phrog_21498	NA	unknown function
UHGV-0066639_18	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0066639_18	eggNOG-mapper	445970.ALIPUT_01611	DNA binding	NA
UHGV-0066639_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0066639_18	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0066639_20	PHROG	phrog_846	NA	unknown function
UHGV-0066639_20	UniRef90	UniRef90_UPI001B3A6488	NA	NA
UHGV-0066639_20	eggNOG-mapper	1235813.JCM10003_625	NA	NA
UHGV-0066639_20	Pfam	PF11363	NA	DUF3164
UHGV-0066639_20	Structural annotation	PF11363	NA	NA
UHGV-0066639_21	UniRef90	UniRef90_UPI0013EB7079	Ig-like domain-containing protein	NA
UHGV-0066639_21	eggNOG-mapper	1227272.HMPREF1556_00727	Bacterial Ig-like domain (group 2)	NA
UHGV-0066639_21	COG	COG5492	NA	NA
UHGV-0066639_21	Structural annotation	PF02368, PF07467, NF005261	NA	NA
UHGV-0066639_22	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0066639_22	UniRef90	UniRef90_A0A143XX02	Bro-N domain-containing protein	NA
UHGV-0066639_22	eggNOG-mapper	1122983.BAJY01000001_gene211	BRO family, N-terminal domain	NA
UHGV-0066639_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0066639_22	COG	COG3617	Prophage antirepressor	NA
UHGV-0066639_25	PHROG	phrog_17154	NA	unknown function
UHGV-0066639_25	UniRef90	UniRef90_UPI001B39F684	transposase	NA
UHGV-0066639_25	eggNOG-mapper	1121098.HMPREF1534_03376	NA	NA
UHGV-0066639_26	PHROG	phrog_6911	NA	unknown function
UHGV-0066639_26	eggNOG-mapper	1203550.HMPREF1475_00585	NA	NA
UHGV-0066639_26	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0066639_27	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-0066639_27	UniRef90	UniRef90_A0A143XV78	Phage virion morphogenesis family protein	NA
UHGV-0066639_27	eggNOG-mapper	1121098.HMPREF1534_03374	Phage virion morphogenesis	NA
UHGV-0066639_27	Pfam	PF05069	Phage virion morphogenesis family	Phage_tail_S
UHGV-0066639_27	COG	COG5005	NA	NA
UHGV-0066639_27	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-0066639_28	PHROG	phrog_19194	NA	unknown function
UHGV-0066639_28	UniRef90	UniRef90_A0A143Y058	Phage Mu protein F like protein	NA
UHGV-0066639_28	eggNOG-mapper	1121098.HMPREF1534_00291	Phage Mu protein F like protein	NA
UHGV-0066639_28	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0066639_28	COG	COG2369	NA	NA
UHGV-0066639_28	Structural annotation	PF18798, PF04233, TIGR01641	NA	NA
UHGV-0066639_29	PHROG	phrog_35074	NA	unknown function
UHGV-0066639_29	UniRef90	UniRef90_UPI001B3A3E48	NA	NA
UHGV-0066639_29	eggNOG-mapper	1122971.BAME01000043_gene3754	NA	NA
UHGV-0066639_29	Pfam	PF06074	NA	DUF935
UHGV-0066639_29	COG	COG4383	NA	NA
UHGV-0066639_29	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0066639_30	PHROG	phrog_195	head-tail adaptor	connector
UHGV-0066639_30	UniRef90	UniRef90_UPI001B3A79A5	NA	NA
UHGV-0066639_30	eggNOG-mapper	888743.HMPREF9141_2828	NA	NA
UHGV-0066639_30	Pfam	PF07030	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
UHGV-0066639_30	COG	COG4387	NA	NA
UHGV-0066639_30	Structural annotation	PF07030, COG4387	NA	NA
UHGV-0066639_31	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0066639_31	eggNOG-mapper	585502.HMPREF0645_2509	NA	NA
UHGV-0066639_31	COG	COG5362	Phage terminase large subunit	NA
UHGV-0066639_31	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5323	NA	NA
UHGV-0066639_32	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0066639_32	UniRef90	UniRef90_A0A143XYA0	HTH cro/C1-type domain-containing protein	NA
UHGV-0066639_32	eggNOG-mapper	742727.HMPREF9447_01706	NA	NA
UHGV-0066639_32	COG	COG5484	NA	NA
UHGV-0066639_32	Structural annotation	PF06056	NA	NA
UHGV-0066639_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0066639_33	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-0066639_33	UniRef90	UniRef90_A0A143XXV0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0066639_33	eggNOG-mapper	1235813.JCM10003_644	NA	NA
UHGV-0066639_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0066639_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0066639_33	Structural annotation	PF00574, PF10123, MF_00444, NF011090, COG0740	NA	NA
UHGV-0066639_34	PHROG	phrog_11320	NA	unknown function
UHGV-0066639_34	UniRef90	UniRef90_UPI001B3A4CE0	BACON domain-containing protein	NA
UHGV-0066639_34	eggNOG-mapper	457424.BFAG_01447	NA	NA
UHGV-0066639_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0066639_35	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0066639_35	PHROG	phrog_3513	endolysin	lysis
UHGV-0066639_35	UniRef90	UniRef90_A0A143XW98	Peptidoglycan hydrolase FlgJ	NA
UHGV-0066639_35	eggNOG-mapper	1203611.KB894547_gene2602	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0066639_35	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0066639_35	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0066639_35	Structural annotation	PF01832, TIGR02541, COG1705	NA	NA
UHGV-0066639_36	eggNOG-mapper	1121098.HMPREF1534_01968	NA	NA
UHGV-0066639_37	PHROG	phrog_6767	NA	unknown function
UHGV-0066639_37	eggNOG-mapper	1121098.HMPREF1534_01967	NA	NA
UHGV-0066639_37	Structural annotation	PF14874, PF10618, TIGR01603, COG5437	NA	NA
UHGV-0066639_38	PHROG	phrog_14983	NA	unknown function
UHGV-0066639_38	eggNOG-mapper	1122971.BAME01000043_gene3765	NA	NA
UHGV-0066639_38	Structural annotation	PF06894, TIGR01674	NA	NA