UHGV-0066677

Genome information

Genome length 35,944 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066677
vOTU ID	vOTU-006773
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_67534
BioSample	SAMEA2338654
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.64
Jumbo phage	No

Genome content
Genome length	35,944 bps
GC content	55.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.58%
Average CDS length	598.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066677_2	PHROG	phrog_419	NA	unknown function
UHGV-0066677_2	eggNOG-mapper	1499683.CCFF01000005_gene67	NA	NA
UHGV-0066677_2	Structural annotation	PF14083	NA	NA
UHGV-0066677_3	PHROG	phrog_3392	NA	unknown function
UHGV-0066677_3	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0066677_6	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0066677_6	UniRef90	UniRef90_UPI000A1A1281	Lar family restriction alleviation protein	NA
UHGV-0066677_6	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-0066677_6	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0066677_6	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0066677_6	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0066677_6	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0066677_7	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0066677_7	PHROG	phrog_15396	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UHGV-0066677_7	UniRef90	UniRef90_A0A1H4JCI1	ParB-like nuclease domain-containing protein	NA
UHGV-0066677_7	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0066677_7	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0066677_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0066677_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0066677_7	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0066677_8	UniRef90	UniRef90_A0A2P8EL88	DNA repair photolyase	NA
UHGV-0066677_8	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0066677_8	COG	COG1533	DNA repair photolyase	NA
UHGV-0066677_9	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0066677_11	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0066677_11	UniRef90	UniRef90_A0A7X5IF66	XRE family transcriptional regulator	NA
UHGV-0066677_11	eggNOG-mapper	661087.HMPREF1008_00898	NA	NA
UHGV-0066677_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0066677_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0066677_12	UniRef90	UniRef90_A0A1Q6E4H5	Terminase	NA
UHGV-0066677_12	eggNOG-mapper	1232436.CAPF01000009_gene1764	Phage terminase, large subunit, PBSX family	NA
UHGV-0066677_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0066677_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0066677_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0066677_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0066677_13	UniRef90	UniRef90_A0A172RXF3	Phage portal protein, putative, A118 family	NA
UHGV-0066677_13	eggNOG-mapper	469378.Ccur_02800	phage minor capsid protein	NA
UHGV-0066677_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0066677_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0066677_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0066677_14	UniRef90	UniRef90_A0A1H8UFB1	Toxin 50 (Fragment)	NA
UHGV-0066677_14	eggNOG-mapper	469378.Ccur_02790	Phage minor capsid protein 2	NA
UHGV-0066677_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0066677_14	COG	COG2369	NA	NA
UHGV-0066677_14	Structural annotation	PF06152	NA	NA
UHGV-0066677_16	PHROG	phrog_31118	NA	unknown function
UHGV-0066677_16	eggNOG-mapper	445975.COLSTE_01111	NA	NA
UHGV-0066677_16	Structural annotation	PF06810	NA	NA
UHGV-0066677_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0066677_17	UniRef90	UniRef90_A0A644YHM7	S-l_SbsC_C domain-containing protein	NA
UHGV-0066677_17	eggNOG-mapper	479437.Elen_2627	NA	NA
UHGV-0066677_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0066677_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0066677_19	eggNOG-mapper	1235794.C811_01373	NA	NA
UHGV-0066677_20	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0066677_20	UniRef90	UniRef90_A0A374U573	Minor capsid protein	NA
UHGV-0066677_20	eggNOG-mapper	469378.Ccur_02720	Minor capsid protein	NA
UHGV-0066677_20	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0066677_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0066677_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0066677_21	UniRef90	UniRef90_A0A7T3V3Z0	Minor capsid protein	NA
UHGV-0066677_21	eggNOG-mapper	1462526.BN990_03879	Minor capsid protein	NA
UHGV-0066677_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0066677_21	Structural annotation	PF11114	NA	NA
UHGV-0066677_22	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0066677_22	eggNOG-mapper	986075.CathTA2_0701	Minor capsid protein from bacteriophage	NA
UHGV-0066677_22	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0066677_23	PHROG	phrog_820	major tail protein	tail
UHGV-0066677_23	UniRef90	UniRef90_A0A1Q6E4N2	BIG2 domain-containing protein	NA
UHGV-0066677_23	eggNOG-mapper	469378.Ccur_02690	Bacterial Ig-like domain (group 2)	NA
UHGV-0066677_23	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0066677_23	COG	COG5492	NA	NA
UHGV-0066677_23	Structural annotation	PF06199, PF02368, TIGR02126, COG5437	NA	NA
UHGV-0066677_25	PHROG	phrog_706	NA	unknown function
UHGV-0066677_25	UniRef90	UniRef90_UPI000DF8321D	Gp15 family bacteriophage protein	NA
UHGV-0066677_25	eggNOG-mapper	479437.Elen_2635	Bacteriophage Gp15 protein	NA
UHGV-0066677_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0066677_25	Structural annotation	PF06854	NA	NA
UHGV-0066677_26	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0066677_26	UniRef90	UniRef90_A0A1Q6E4K3	PhageMin_Tail domain-containing protein	NA
UHGV-0066677_26	eggNOG-mapper	445975.COLSTE_01102	Phage-related minor tail protein	NA
UHGV-0066677_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0066677_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0066677_26	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0066677_26	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0066677_27	UniRef90	UniRef90_UPI000C773D0D	fibronectin type III domain-containing protein	NA
UHGV-0066677_27	eggNOG-mapper	1235794.C811_01381	Fibronectin type 3 domain	NA
UHGV-0066677_27	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0066677_28	PHROG	phrog_1887	tail protein	tail
UHGV-0066677_28	eggNOG-mapper	883077.HMPREF9241_01708	NA	NA
UHGV-0066677_28	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0066677_30	UniRef90	UniRef90_R6H7L2	BppU_N domain-containing protein	NA
UHGV-0066677_30	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0066677_31	PHROG	phrog_3639	minor tail protein	tail
UHGV-0066677_31	eggNOG-mapper	742735.HMPREF9467_00718	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0066677_31	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0066677_31	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0066677_32	PHROG	phrog_9116	tail protein	tail
UHGV-0066677_32	UniRef90	UniRef90_R6I7N6	Tail Collar domain protein	NA
UHGV-0066677_32	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-0066677_32	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0066677_32	COG	COG4675	Phage tail collar domain	NA
UHGV-0066677_34	PHROG	phrog_199	holin	lysis
UHGV-0066677_34	UniRef90	UniRef90_S4HBL4	Toxin secretion/phage lysis holin	NA
UHGV-0066677_34	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0066677_34	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0066677_34	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0066677_34	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0066677_36	PHROG	phrog_21825	endolysin	lysis
UHGV-0066677_36	UniRef90	UniRef90_A0A561ERX2	Putative peptidoglycan binding protein	NA
UHGV-0066677_36	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0066677_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-0066677_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0066677_36	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0066677_36	Structural annotation	PF01471, TIGR02594, NF038080, COG3409	NA	NA
UHGV-0066677_37	KOfam	K14059	int; integrase	NA
UHGV-0066677_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0066677_37	UniRef90	UniRef90_A0A425VU74	Site-specific integrase	NA
UHGV-0066677_37	eggNOG-mapper	1235794.C811_01693	Belongs to the 'phage' integrase family	NA
UHGV-0066677_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0066677_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0066677_37	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0066677_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0066677_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0066677_39	UniRef90	UniRef90_A0A1Q6E4H7	HTH cro/C1-type domain-containing protein	NA
UHGV-0066677_39	eggNOG-mapper	268407.PWYN_03190	Peptidase S24-like	NA
UHGV-0066677_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0066677_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0066677_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0066677_39	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0066677_42	PHROG	phrog_36956	NA	unknown function
UHGV-0066677_44	UniRef90	UniRef90_R6HI93	HTH_17 domain-containing protein	NA
UHGV-0066677_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0066677_46	UniRef90	UniRef90_A0A8B0GPV3	NA	NA
UHGV-0066677_46	eggNOG-mapper	469378.Ccur_02980	NA	NA
UHGV-0066677_46	Pfam	PF07083	NA	DUF1351
UHGV-0066677_46	Structural annotation	PF07083	NA	NA
UHGV-0066677_47	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066677_47	UniRef90	UniRef90_R6HK90	Phage recombination protein Bet	NA
UHGV-0066677_47	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0066677_47	Pfam	PF03837	RecT family	RecT
UHGV-0066677_47	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0066677_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0066677_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0066677_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0066677_48	UniRef90	UniRef90_A0A1Q6E4G3	Single-stranded DNA-binding protein	NA
UHGV-0066677_48	eggNOG-mapper	469378.Ccur_11550	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0066677_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0066677_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0066677_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0066677_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0066677_48	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0066677_49	PHROG	phrog_15768	NA	unknown function
UHGV-0066677_49	UniRef90	UniRef90_R6HI89	Phg_2220_C domain-containing protein	NA
UHGV-0066677_49	Pfam	PF19808	NA	DUF6291
UHGV-0066677_49	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0066677_49	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0066677_49	Structural annotation	PF09524, PF19808, TIGR02220	NA	NA
UHGV-0066677_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0066677_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0066677_50	UniRef90	UniRef90_A0A1Q6E4K8	IstB_IS21 domain-containing protein	NA
UHGV-0066677_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0066677_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0066677_50	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0066677_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0066677_51	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066677_51	UniRef90	UniRef90_C8WLT7	Endodeoxyribonuclease RusA	NA
UHGV-0066677_51	eggNOG-mapper	479437.Elen_2598	Endodeoxyribonuclease RusA	NA
UHGV-0066677_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0066677_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0066677_51	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0066677_53	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0066677_53	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0066677_53	UniRef90	UniRef90_R6HJ77	dUTP diphosphatase	NA
UHGV-0066677_53	eggNOG-mapper	1007096.BAGW01000014_gene1238	dUTPase	NA
UHGV-0066677_53	Pfam	PF00692	dUTPase	dUTPase
UHGV-0066677_53	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0066677_55	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0066677_55	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0066677_55	UniRef90	UniRef90_A0A415UW88	Flavin-dependent thymidylate synthase	NA
UHGV-0066677_55	eggNOG-mapper	580340.Tlie_0744	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0066677_55	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0066677_55	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0066677_55	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0066677_55	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0066677_55	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA