UHGV-0066790

Genome information

Genome length 47,800 bps

CDS count 78

Completeness 100.00% (complete)

geNomad score 0.9611

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066790
vOTU ID	vOTU-002131
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_88385
BioSample	SAMEA2338853
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9611
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.76
Jumbo phage	No

Genome content
Genome length	47,800 bps
GC content	56.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	89.89%
Average CDS length	557.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066790_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066790_2	UniRef90	UniRef90_UPI000920C4D0	ERF family protein	NA
UHGV-0066790_2	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0066790_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0066790_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0066790_2	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0066790_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0066790_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0066790_3	UniRef90	UniRef90_E5Y6K0	Single-stranded DNA-binding protein	NA
UHGV-0066790_3	eggNOG-mapper	1408428.JNJP01000007_gene1895	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0066790_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0066790_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0066790_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0066790_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0066790_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0066790_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0066790_4	UniRef90	UniRef90_UPI001AD80219	siphovirus Gp157 family protein	NA
UHGV-0066790_4	eggNOG-mapper	665942.HMPREF1022_00116	PFAM Gp157 family protein	NA
UHGV-0066790_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0066790_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0066790_5	eggNOG-mapper	457398.HMPREF0326_03035	NA	NA
UHGV-0066790_6	PHROG	phrog_1029	NA	unknown function
UHGV-0066790_6	UniRef90	UniRef90_A0A4V6L4T1	NA	NA
UHGV-0066790_6	eggNOG-mapper	457398.HMPREF0326_03036	NA	NA
UHGV-0066790_12	UniRef90	UniRef90_UPI00058D2A85	transcriptional regulator	NA
UHGV-0066790_12	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA
UHGV-0066790_15	eggNOG-mapper	1408428.JNJP01000012_gene1089	NA	NA
UHGV-0066790_17	KOfam	K14059	int; integrase	NA
UHGV-0066790_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0066790_17	UniRef90	UniRef90_UPI001D0A28F9	tyrosine-type recombinase/integrase	NA
UHGV-0066790_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0066790_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0066790_17	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0066790_19	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0066790_19	UniRef90	UniRef90_UPI0009DDAACD	phage tail assembly chaperone	NA
UHGV-0066790_19	eggNOG-mapper	1408428.JNJP01000012_gene1139	Phage tail assembly chaperone protein	NA
UHGV-0066790_19	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0066790_19	Structural annotation	PF16778	NA	NA
UHGV-0066790_20	eggNOG-mapper	563192.HMPREF0179_03429	domain, Protein	NA
UHGV-0066790_20	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0066790_20	Structural annotation	PF03406	NA	NA
UHGV-0066790_21	PHROG	phrog_587	structural protein	head and packaging
UHGV-0066790_21	UniRef90	UniRef90_UPI001D0B62A6	NA	NA
UHGV-0066790_21	eggNOG-mapper	1408428.JNJP01000012_gene1138	NA	NA
UHGV-0066790_21	Pfam	PF11041	NA	DUF2612
UHGV-0066790_21	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0066790_22	PHROG	phrog_6	baseplate protein	tail
UHGV-0066790_22	UniRef90	UniRef90_UPI001D0A3DF4	baseplate J/gp47 family protein	NA
UHGV-0066790_22	eggNOG-mapper	1408428.JNJP01000012_gene1137	of phage Mu protein gp47	NA
UHGV-0066790_22	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0066790_22	COG	COG3299	NA	NA
UHGV-0066790_22	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0066790_23	PHROG	phrog_120	baseplate protein	tail
UHGV-0066790_23	eggNOG-mapper	1408428.JNJP01000012_gene1136	NA	NA
UHGV-0066790_24	UniRef90	UniRef90_UPI001D09CCC9	pyocin knob domain-containing protein	NA
UHGV-0066790_24	eggNOG-mapper	563192.HMPREF0179_01736	NA	NA
UHGV-0066790_24	COG	COG5563	NA	NA
UHGV-0066790_25	UniRef90	UniRef90_UPI001D0BAEF5	phage baseplate assembly protein	NA
UHGV-0066790_25	eggNOG-mapper	1408428.JNJP01000012_gene1134	Baseplate assembly protein	NA
UHGV-0066790_25	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0066790_25	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0066790_25	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0066790_26	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0066790_26	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-0066790_26	eggNOG-mapper	1408428.JNJP01000012_gene1133	NA	NA
UHGV-0066790_26	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0066790_27	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0066790_27	UniRef90	UniRef90_A0A077K9U4	Putative structural protein	NA
UHGV-0066790_27	eggNOG-mapper	1408428.JNJP01000012_gene1132	NA	NA
UHGV-0066790_28	PHROG	phrog_1830	NA	unknown function
UHGV-0066790_28	eggNOG-mapper	1408428.JNJP01000012_gene1131	NA	NA
UHGV-0066790_28	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0066790_28	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0066790_29	PHROG	phrog_3824	NA	unknown function
UHGV-0066790_29	UniRef90	UniRef90_A0A345MV29	Tail protein	NA
UHGV-0066790_29	eggNOG-mapper	1408428.JNJP01000012_gene1130	domain protein	NA
UHGV-0066790_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0066790_29	COG	COG1511	NA	NA
UHGV-0066790_29	Structural annotation	TIGR01760	NA	NA
UHGV-0066790_30	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0066790_30	eggNOG-mapper	1408428.JNJP01000012_gene1128	NA	NA
UHGV-0066790_30	Structural annotation	PF21822	NA	NA
UHGV-0066790_31	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0066790_31	eggNOG-mapper	1408428.JNJP01000012_gene1127	NA	NA
UHGV-0066790_31	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0066790_32	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0066790_32	UniRef90	UniRef90_UPI001D0A9FB2	NA	NA
UHGV-0066790_32	eggNOG-mapper	1408428.JNJP01000012_gene1126	NA	NA
UHGV-0066790_32	Pfam	PF11863	NA	DUF3383
UHGV-0066790_32	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0066790_33	PHROG	phrog_1876	NA	unknown function
UHGV-0066790_33	eggNOG-mapper	1408428.JNJP01000012_gene1125	NA	NA
UHGV-0066790_33	Structural annotation	PF16807	NA	NA
UHGV-0066790_34	PHROG	phrog_1912	head protein	head and packaging
UHGV-0066790_34	eggNOG-mapper	243265.plu3397	NA	NA
UHGV-0066790_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0066790_35	PHROG	phrog_222	tail protein	tail
UHGV-0066790_35	UniRef90	UniRef90_A0A2D0KKN8	Phage morphogeneis protein	NA
UHGV-0066790_35	eggNOG-mapper	1408428.JNJP01000012_gene1123	Phage virion morphogenesis protein	NA
UHGV-0066790_35	COG	COG5005	NA	NA
UHGV-0066790_36	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0066790_36	UniRef90	UniRef90_UPI00049759A7	NA	NA
UHGV-0066790_36	eggNOG-mapper	1408428.JNJP01000012_gene1122	NA	NA
UHGV-0066790_36	Pfam	PF13262	NA	DUF4054
UHGV-0066790_36	Structural annotation	PF13262	NA	NA
UHGV-0066790_37	PHROG	phrog_2085	NA	unknown function
UHGV-0066790_37	eggNOG-mapper	243265.plu3400	NA	NA
UHGV-0066790_38	PHROG	phrog_4936	transcriptional regulator	transcription regulation
UHGV-0066790_38	eggNOG-mapper	1408428.JNJP01000012_gene1120	BRO family, N-terminal domain	NA
UHGV-0066790_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0066790_40	UniRef90	UniRef90_A0A0X8JHZ4	Peptidase M23	NA
UHGV-0066790_40	eggNOG-mapper	563192.HMPREF0179_01724	NA	NA
UHGV-0066790_41	UniRef90	UniRef90_UPI00158523E5	GNAT family N-acetyltransferase	NA
UHGV-0066790_41	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-0066790_41	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0066790_44	KOfam	K19128	csy2; CRISPR-associated protein Csy2	NA
UHGV-0066790_44	UniRef90	UniRef90_E5Y9T9	CRISPR type I-f/ypest-associated protein csy2	NA
UHGV-0066790_44	eggNOG-mapper	563192.HMPREF0179_02957	CRISPR-associated protein (Cas_Csy2)	NA
UHGV-0066790_44	PADLOC	cls000849	CAS-I-F; effector_LS	CRISPR-CAS
UHGV-0066790_44	Pfam	PF09614	CRISPR-associated protein (Cas_Csy2)	Cas_Csy2
UHGV-0066790_46	PHROG	phrog_264	major head protein	head and packaging
UHGV-0066790_46	UniRef90	UniRef90_UPI0004958FBA	NA	NA
UHGV-0066790_46	eggNOG-mapper	1408428.JNJP01000012_gene1117	Protein conserved in bacteria	NA
UHGV-0066790_46	Pfam	PF09950	NA	DUF2184
UHGV-0066790_46	COG	COG4834	NA	NA
UHGV-0066790_46	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0066790_47	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0066790_47	eggNOG-mapper	1408428.JNJP01000012_gene1116	NA	NA
UHGV-0066790_47	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0066790_48	KOfam	K09960	NA	NA
UHGV-0066790_48	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0066790_48	UniRef90	UniRef90_UPI001D0A9CAD	NA	NA
UHGV-0066790_48	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0066790_48	Pfam	PF09979	NA	DUF2213
UHGV-0066790_48	COG	COG3566	NA	NA
UHGV-0066790_48	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0066790_49	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0066790_49	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-0066790_49	eggNOG-mapper	1408428.JNJP01000012_gene1114	protein homolog of phage Mu protein gp30	NA
UHGV-0066790_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0066790_49	COG	COG2369	NA	NA
UHGV-0066790_49	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0066790_50	KOfam	K09961	NA	NA
UHGV-0066790_50	PHROG	phrog_146	portal protein	head and packaging
UHGV-0066790_50	UniRef90	UniRef90_UPI001D0BAEDD	NA	NA
UHGV-0066790_50	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0066790_50	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0066790_50	COG	COG3567	NA	NA
UHGV-0066790_50	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0066790_51	KOfam	K01150	endA; deoxyribonuclease I [EC:3.1.21.1]	NA
UHGV-0066790_51	PHROG	phrog_6861	NA	unknown function
UHGV-0066790_51	UniRef90	UniRef90_UPI001D0A7513	endonuclease	NA
UHGV-0066790_51	eggNOG-mapper	1408428.JNJP01000012_gene1112	Endonuclease I	NA
UHGV-0066790_51	Pfam	PF04231	Endonuclease I	Endonuclease_1
UHGV-0066790_51	COG	COG2356	Endonuclease I	NA
UHGV-0066790_51	Structural annotation	PF04231, NF011716, COG2356	NA	NA
UHGV-0066790_52	PHROG	phrog_5573	terminase large subunit	head and packaging
UHGV-0066790_52	UniRef90	UniRef90_UPI0009DEEE6C	phage terminase large subunit	NA
UHGV-0066790_52	eggNOG-mapper	1408428.JNJP01000012_gene1111	Terminase RNaseH-like domain	NA
UHGV-0066790_52	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0066790_52	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0066790_52	COG	COG5362	Phage terminase large subunit	NA
UHGV-0066790_54	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066790_54	UniRef90	UniRef90_H2EI45	Putative HNH endonuclease	NA
UHGV-0066790_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0066790_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0066790_57	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0066790_57	UniRef90	UniRef90_UPI00193DD0E5	helix-turn-helix domain-containing protein	NA
UHGV-0066790_57	eggNOG-mapper	1408428.JNJP01000012_gene1110	NA	NA
UHGV-0066790_61	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0066790_61	PHROG	phrog_894	endolysin	lysis
UHGV-0066790_61	UniRef90	UniRef90_S2KWS0	Peptidase_M15_3 domain-containing protein	NA
UHGV-0066790_61	eggNOG-mapper	1408428.JNJP01000012_gene1106	Peptidase M15	NA
UHGV-0066790_61	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0066790_61	COG	COG3108	NA	NA
UHGV-0066790_61	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0066790_62	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0066790_62	UniRef90	UniRef90_UPI001D0AE6E9	RNA helicase	NA
UHGV-0066790_62	eggNOG-mapper	563192.HMPREF0179_00159	PFAM Mor transcription activator	NA
UHGV-0066790_62	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0066790_63	Structural annotation	TIGR03188, COG0140	NA	NA
UHGV-0066790_64	Structural annotation	NF033499	NA	NA
UHGV-0066790_65	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0066790_65	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066790_65	UniRef90	UniRef90_UPI0006899252	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0066790_65	eggNOG-mapper	1408428.JNJP01000012_gene1102	Endodeoxyribonuclease RusA	NA
UHGV-0066790_65	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0066790_65	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0066790_65	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0066790_66	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0066790_66	UniRef90	UniRef90_E5Y6E0	Mor domain-containing protein	NA
UHGV-0066790_66	eggNOG-mapper	1408428.JNJP01000012_gene1101	PFAM Mor transcription activator domain protein	NA
UHGV-0066790_66	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0066790_66	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0066790_67	PHROG	phrog_12459	NA	unknown function
UHGV-0066790_68	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0066790_68	UniRef90	UniRef90_A0A0C9Q4P0	Bifunctional DNA primase/polymerase	NA
UHGV-0066790_68	eggNOG-mapper	644282.Deba_1720	PFAM Bifunctional DNA primase polymerase, N-terminal	NA
UHGV-0066790_68	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0066790_68	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0066790_68	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-0066790_69	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0066790_69	eggNOG-mapper	563192.HMPREF0179_01754	DnaD domain protein	NA
UHGV-0066790_69	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0066790_71	Structural annotation	PF10013, COG4338	NA	NA
UHGV-0066790_75	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0066790_75	UniRef90	UniRef90_UPI001D0B241C	phage antirepressor KilAC domain-containing protein	NA
UHGV-0066790_75	eggNOG-mapper	563192.HMPREF0179_03259	Phage antirepressor protein KilAC domain	NA
UHGV-0066790_75	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0066790_75	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0066790_75	COG	COG3617	Prophage antirepressor	NA
UHGV-0066790_75	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0066790_78	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0066790_78	UniRef90	UniRef90_E5Y9K3	HNHc domain-containing protein	NA
UHGV-0066790_78	eggNOG-mapper	563192.HMPREF0179_02918	HNH nucleases	NA
UHGV-0066790_78	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0066790_78	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA